Information for 5-GCCTTGGCACATA (Motif 7)

A C T G A T G C A G T C A C G T A C G T A C T G C T A G A G T C C G T A A G T C C G T A A C G T C G T A
Reverse Opposite:
A C G T T G C A A C G T A C T G A C G T A C T G G A T C G T A C C G T A C G T A A C T G A T C G G T A C
p-value:1e-12
log p-value:-2.902e+01
Information Content per bp:1.922
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.0 +/- 16.0bp
Average Position of motif in Background46.2 +/- 12.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GCCTTGGCACATA
-NNTTGGCANN--
 A C T G A T G C A G T C A C G T A C G T A C T G C T A G A G T C C G T A A G T C C G T A A C G T C G T A
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCCTTGGCACATA
--NTTGGCANN--
 A C T G A T G C A G T C A C G T A C G T A C T G C T A G A G T C C G T A A G T C C G T A A C G T C G T A
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCCTTGGCACATA
--CTTGGCAA---
 A C T G A T G C A G T C A C G T A C G T A C T G C T A G A G T C C G T A A G T C C G T A A C G T C G T A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCCTTGGCACATA
---TTGGCA----
 A C T G A T G C A G T C A C G T A C G T A C T G C T A G A G T C C G T A A G T C C G T A A C G T C G T A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCCTTGGCACATA-----
--CGAAGCACACAAAATA
 A C T G A T G C A G T C A C G T A C G T A C T G C T A G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0096.1_Zfp187_1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCCTTGGCACATA-
TTATTAGTACATAN
 A C T G A T G C A G T C A C G T A C G T A C T G C T A G A G T C C G T A A G T C C G T A A C G T C G T A A C G T
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCCTTGGCACATA
-GGTTGGCAT---
 A C T G A T G C A G T C A C G T A C G T A C T G C T A G A G T C C G T A A G T C C G T A A C G T C G T A
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCTTGGCACATA
WDNCTGGGCA----
 A C G T A C T G A T G C A G T C A C G T A C G T A C T G C T A G A G T C C G T A A G T C C G T A A C G T C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCCTTGGCACATA
TGACCTTGAN-----
 A C G T A C G T A C T G A T G C A G T C A C G T A C G T A C T G C T A G A G T C C G T A A G T C C G T A A C G T C G T A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCCTTGGCACATA
--CCAGGAACAG-
 A C T G A T G C A G T C A C G T A C G T A C T G C T A G A G T C C G T A A G T C C G T A A C G T C G T A
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T