Information for 1-VAGGTCASGGTGACCY (Motif 1)

T A G C T C G A C A T G T A C G G C A T A G T C G C T A T A C G T C A G T A C G G A C T A T C G T C G A A T G C G T A C A G C T
Reverse Opposite:
C T G A C A T G T A C G A C G T A T G C C T G A A T G C A G T C A T G C C G A T A C T G C G T A A T G C G T A C A G C T A T C G
p-value:1e-47
log p-value:-1.099e+02
Information Content per bp:1.613
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif7.95%
Number of Background Sequences with motif313.0
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets54.0 +/- 18.4bp
Average Position of motif in Background47.5 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ESR1/MA0112.3/Jaspar

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:VAGGTCASGGTGACCY-
CAGGTCACCGTGACCTT
 T A G C T C G A C A T G T A C G G C A T A G T C G C T A T A C G T C A G T A C G G A C T A T C G T C G A A T G C G T A C A G C T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:forward strand
Alignment:VAGGTCASGGTGACCY
NAGGTCACNNTGACC-
 T A G C T C G A C A T G T A C G G C A T A G T C G C T A T A C G T C A G T A C G G A C T A T C G T C G A A T G C G T A C A G C T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:VAGGTCASGGTGACCY
-AGGNCANNGTGACCT
 T A G C T C G A C A T G T A C G G C A T A G T C G C T A T A C G T C A G T A C G G A C T A T C G T C G A A T G C G T A C A G C T
A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-VAGGTCASGGTGACCY---
GTAGGTCACGGTGACCTACT
 A C G T T A G C T C G A C A T G T A C G G C A T A G T C G C T A T A C G T C A G T A C G G A C T A T C G T C G A A T G C G T A C A G C T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:VAGGTCASGGTGACCY
-AGGTCAAGGTCA---
 T A G C T C G A C A T G T A C G G C A T A G T C G C T A T A C G T C A G T A C G G A C T A T C G T C G A A T G C G T A C A G C T
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:VAGGTCASGGTGACCY
-AGGTCAAGGTCA---
 T A G C T C G A C A T G T A C G G C A T A G T C G C T A T A C G T C A G T A C G G A C T A T C G T C G A A T G C G T A C A G C T
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:forward strand
Alignment:VAGGTCASGGTGACCY
-AGGTCA---------
 T A G C T C G A C A T G T A C G G C A T A G T C G C T A T A C G T C A G T A C G G A C T A T C G T C G A A T G C G T A C A G C T
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-VAGGTCASGGTGACCY
TRAGGTCA---------
 A C G T T A G C T C G A C A T G T A C G G C A T A G T C G C T A T A C G T C A G T A C G G A C T A T C G T C G A A T G C G T A C A G C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:VAGGTCASGGTGACCY--
--TGACCCAGTGACCTAC
 T A G C T C G A C A T G T A C G G C A T A G T C G C T A T A C G T C A G T A C G G A C T A T C G T C G A A T G C G T A C A G C T A C G T A C G T
A C G T A C G T G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:VAGGTCASGGTGACCY
AAGGTCAC--------
 T A G C T C G A C A T G T A C G G C A T A G T C G C T A T A C G T C A G T A C G G A C T A T C G T C G A A T G C G T A C A G C T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T