Information for 5-AAACCAAGGCAGGCAA (Motif 15)

C T G A G T C A C G T A G T A C G T A C G T C A C G T A C T A G C T A G T G A C C T G A A C T G A C T G T A G C G T C A C G T A
Reverse Opposite:
A C G T A C G T A T C G G T A C G T A C A G C T A C T G A G T C A G T C A C G T A C G T C A T G A C T G A C G T A C G T A G C T
p-value:1e-12
log p-value:-2.859e+01
Information Content per bp:1.744
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets66.1 +/- 22.8bp
Average Position of motif in Background44.7 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AAACCAAGGCAGGCAA
AAAACAAAGG-------
 A C G T C T G A G T C A C G T A G T A C G T A C G T C A C G T A C T A G C T A G T G A C C T G A A C T G A C T G T A G C G T C A C G T A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAACCAAGGCAGGCAA
GGAACAAAGR-------
 A C G T C T G A G T C A C G T A G T A C G T A C G T C A C G T A C T A G C T A G T G A C C T G A A C T G A C T G T A G C G T C A C G T A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAACCAAGGCAGGCAA
-AACAAAGG-------
 C T G A G T C A C G T A G T A C G T A C G T C A C G T A C T A G C T A G T G A C C T G A A C T G A C T G T A G C G T C A C G T A
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AAACCAAGGCAGGCAA
AGAAGAACAAAGGACTA---
 A C G T A C G T A C G T A C G T C T G A G T C A C G T A G T A C G T A C G T C A C G T A C T A G C T A G T G A C C T G A A C T G A C T G T A G C G T C A C G T A
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AAACCAAGGCAGGCAA
ATAAGAACAAAGGACTA---
 A C G T A C G T A C G T A C G T C T G A G T C A C G T A G T A C G T A C G T C A C G T A C T A G C T A G T G A C C T G A A C T G A C T G T A G C G T C A C G T A
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAACCAAGGCAGGCAA
VRRACAAWGG-------
 A C G T C T G A G T C A C G T A G T A C G T A C G T C A C G T A C T A G C T A G T G A C C T G A A C T G A C T G T A G C G T C A C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AAACCAAGGCAGGCAA
-RACAAWGG-------
 C T G A G T C A C G T A G T A C G T A C G T C A C G T A C T A G C T A G T G A C C T G A A C T G A C T G T A G C G T C A C G T A
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AAACCAAGGCAGGCAA
AAAACAATGG-------
 A C G T C T G A G T C A C G T A G T A C G T A C G T C A C G T A C T A G C T A G T G A C C T G A A C T G A C T G T A G C G T C A C G T A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AAACCAAGGCAGGCAA
AAACAGACAAAGGAAT----
 A C G T A C G T A C G T A C G T C T G A G T C A C G T A G T A C G T A C G T C A C G T A C T A G C T A G T G A C C T G A A C T G A C T G T A G C G T C A C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAACCAAGGCAGGCAA
GAACAATGGN------
 C T G A G T C A C G T A G T A C G T A C G T C A C G T A C T A G C T A G T G A C C T G A A C T G A C T G T A G C G T C A C G T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T