Information for 1-HAGGTCASSCTGACCT (Motif 1)

G T C A T C G A C A T G T A C G C G A T A G T C C G T A T A G C T A G C A T G C G C A T T A C G G T C A T G A C G A T C G A C T
Reverse Opposite:
C T G A C A T G A C T G C A G T A T G C C G T A T A C G A T C G A T C G G C A T T C A G G C T A A T G C G T A C A G C T C A G T
p-value:1e-122
log p-value:-2.831e+02
Information Content per bp:1.537
Number of Target Sequences with motif178.0
Percentage of Target Sequences with motif21.63%
Number of Background Sequences with motif929.3
Percentage of Background Sequences with motif2.00%
Average Position of motif in Targets52.8 +/- 19.9bp
Average Position of motif in Background49.3 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.95
Offset:2
Orientation:reverse strand
Alignment:HAGGTCASSCTGACCT-
--GGTCANNGTGACCTN
 G T C A T C G A C A T G T A C G C G A T A G T C C G T A T A G C T A G C A T G C G C A T T A C G G T C A T G A C G A T C G A C T A C G T
A C G T A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:HAGGTCASSCTGACCT
-AGGNCANNGTGACCT
 G T C A T C G A C A T G T A C G C G A T A G T C C G T A T A G C T A G C A T G C G C A T T A C G G T C A T G A C G A T C G A C T
A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:HAGGTCASSCTGACCT-
CAGGTCACCGTGACCTT
 G T C A T C G A C A T G T A C G C G A T A G T C C G T A T A G C T A G C A T G C G C A T T A C G G T C A T G A C G A T C G A C T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--HAGGTCASSCTGACCT--
AGTAGGTCACNGTGACCTAC
 A C G T A C G T G T C A T C G A C A T G T A C G C G A T A G T C C G T A T A G C T A G C A T G C G C A T T A C G G T C A T G A C G A T C G A C T A C G T A C G T
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:HAGGTCASSCTGACCT
NAGAACAGNCTGTNCT
 G T C A T C G A C A T G T A C G C G A T A G T C C G T A T A G C T A G C A T G C G C A T T A C G G T C A T G A C G A T C G A C T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:HAGGTCASSCTGACCT
NAGNACANNNTGTNCT
 G T C A T C G A C A T G T A C G C G A T A G T C C G T A T A G C T A G C A T G C G C A T T A C G G T C A T G A C G A T C G A C T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.69
Offset:10
Orientation:reverse strand
Alignment:HAGGTCASSCTGACCT
----------TGACCT
 G T C A T C G A C A T G T A C G C G A T A G T C C G T A T A G C T A G C A T G C G C A T T A C G G T C A T G A C G A T C G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.68
Offset:10
Orientation:reverse strand
Alignment:HAGGTCASSCTGACCT--
----------TGACCTYA
 G T C A T C G A C A T G T A C G C G A T A G T C C G T A T A G C T A G C A T G C G C A T T A C G G T C A T G A C G A T C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:HAGGTCASSCTGACCT
VAGRACAKWCTGTYC-
 G T C A T C G A C A T G T A C G C G A T A G T C C G T A T A G C T A G C A T G C G C A T T A C G G T C A T G A C G A T C G A C T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.66
Offset:10
Orientation:reverse strand
Alignment:HAGGTCASSCTGACCT--
----------TGACCYCT
 G T C A T C G A C A T G T A C G C G A T A G T C C G T A T A G C T A G C A T G C G C A T T A C G G T C A T G A C G A T C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T