Information for 17-CCCGCCTGCAAGC (Motif 35)

A T G C A G T C A G T C A T C G G T A C A G T C A G C T A T C G A T G C T C G A C T G A T A C G G T A C
Reverse Opposite:
A C T G A T G C A G C T A C G T A T C G A T G C C T G A A C T G A C T G A T G C T A C G A C T G T A C G
p-value:1e-11
log p-value:-2.608e+01
Information Content per bp:1.782
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets47.9 +/- 31.8bp
Average Position of motif in Background34.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SP2/MA0516.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCCGCCTGCAAGC
GCCCCGCCCCCTCCC
 A C G T A C G T A T G C A G T C A G T C A T C G G T A C A G T C A G C T A T C G A T G C T C G A C T G A T A C G G T A C
A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCCGCCTGCAAGC
TTCCCGCCWG-----
 A C G T A C G T A T G C A G T C A G T C A T C G G T A C A G T C A G C T A T C G A T G C T C G A C T G A T A C G G T A C
A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G A C G T A C G T A C G T A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCCGCCTGCAAGC
GCCCCGCCCCC----
 A C G T A C G T A T G C A G T C A G T C A T C G G T A C A G T C A G C T A T C G A T G C T C G A C T G A T A C G G T A C
A C T G A G T C G A T C A G T C A G T C C A T G A G T C A G T C A G T C G A T C A G T C A C G T A C G T A C G T A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCCGCCTGCAAGC
TTTCCCGCCMAV----
 A C G T A C G T A C G T A T G C A G T C A G T C A T C G G T A C A G T C A G C T A T C G A T G C T C G A C T G A T A C G G T A C
C G A T G A C T A C G T A T G C A T G C A G T C A C T G A T G C T A G C G T A C T G C A T G A C A C G T A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCCGCCTGCAAGC
NCTTCCCGCCC------
 A C G T A C G T A C G T A C G T A T G C A G T C A G T C A T C G G T A C A G T C A G C T A T C G A T G C T C G A C T G A T A C G G T A C
A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

E2F4/MA0470.1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CCCGCCTGCAAGC
NNTTCCCGCCC------
 A C G T A C G T A C G T A C G T A T G C A G T C A G T C A T C G G T A C A G T C A G C T A T C G A T G C T C G A C T G A T A C G G T A C
A G T C A G T C A G C T A G C T A T G C A T G C A G T C A C T G A T G C A T G C T G A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCCGCCTGCAAGC
TACGCCCCGCCACTCTG-
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C A G T C A T C G G T A C A G T C A G C T A T C G A T G C T C G A C T G A T A C G G T A C
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T

POL003.1_GC-box/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCCGCCTGCAAGC
NAGCCCCGCCCCCN---
 A C G T A C G T A C G T A C G T A T G C A G T C A G T C A T C G G T A C A G T C A G C T A T C G A T G C T C G A C T G A T A C G G T A C
G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CCCGCCTGCAAGC
GGCCCCGCCCCC----
 A C G T A C G T A C G T A T G C A G T C A G T C A T C G G T A C A G T C A G C T A T C G A T G C T C G A C T G A T A C G G T A C
T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCCGCCTGCAAGC
VBSYGTCTGG----
 A C G T A T G C A G T C A G T C A T C G G T A C A G T C A G C T A T C G A T G C T C G A C T G A T A C G G T A C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T