Information for 7-AATTTATTTT (Motif 12)

C T G A C G T A C G A T C G A T C G A T T G C A G A C T A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A C T G A A C G T C G T A C G T A G C T A A C G T A G C T
p-value:1e-16
log p-value:-3.828e+01
Information Content per bp:1.797
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.6 +/- 27.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AATTTATTTT-
TAATTNVATTAN
 A C G T C T G A C G T A C G A T C G A T C G A T T G C A G A C T A C G T A C G T A C G T A C G T
G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

PB0186.1_Tcf3_2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AATTTATTTT-----
NNTTTNTTTTNGNNN
 C T G A C G T A C G A T C G A T C G A T T G C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G A T A G C T C G A T A C G T C G A T C G A T C G A T A G C T G C A T T A G C A T C G T A C G A T G C G A C T

Lhx3/MA0135.1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AATTTATTTT
GATTAATTAATTT
 A C G T A C G T A C G T C T G A C G T A C G A T C G A T C G A T T G C A G A C T A C G T A C G T A C G T
T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T

PROP1/MA0715.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AATTTATTTT
TAATTAAATTA
 A C G T C T G A C G T A C G A T C G A T C G A T T G C A G A C T A C G T A C G T A C G T
G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AATTTATTTT
-AATTATT--
 C T G A C G T A C G A T C G A T C G A T T G C A G A C T A C G T A C G T A C G T
A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AATTTATTTT
TAATTTAATTA
 A C G T C T G A C G T A C G A T C G A T C G A T T G C A G A C T A C G T A C G T A C G T
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

MEF2C/MA0497.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AATTTATTTT------
-TTCTATTTTTAGNNN
 C T G A C G T A C G A T C G A T C G A T T G C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

Phox2b/MA0681.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AATTTATTTT
TAATTTAATTA
 A C G T C T G A C G T A C G A T C G A T C G A T T G C A G A C T A C G T A C G T A C G T
G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AATTTATTTT----
--KCTATTTTTRGH
 C T G A C G T A C G A T C G A T C G A T T G C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATTTATTTT
YTAATYNRATTA
 A C G T A C G T C T G A C G T A C G A T C G A T C G A T T G C A G A C T A C G T A C G T A C G T
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A