Information for 9-AGATGTCACG (Motif 16)

C G T A C T A G T G C A A C G T A C T G A G C T A G T C C G T A A G T C A T C G
Reverse Opposite:
A T G C C T A G A C G T A C T G C T G A G T A C G T C A A C G T A G T C A C G T
p-value:1e-10
log p-value:-2.448e+01
Information Content per bp:1.854
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif43.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets62.5 +/- 25.2bp
Average Position of motif in Background54.3 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:AGATGTCACG-
---AGTCACGC
 C G T A C T A G T G C A A C G T A C T G A G C T A G T C C G T A A G T C A T C G A C G T
A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AGATGTCACG
ARNTGACA--
 C G T A C T A G T G C A A C G T A C T G A G C T A G T C C G T A A G T C A T C G
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGATGTCACG
AGGTGTCA--
 C G T A C T A G T G C A A C G T A C T G A G C T A G T C C G T A A G T C A T C G
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AGATGTCACG
-CCTGTCAA-
 C G T A C T A G T G C A A C G T A C T G A G C T A G T C C G T A A G T C A T C G
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AGATGTCACG--
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T C G T A C T A G T G C A A C G T A C T G A G C T A G T C C G T A A G T C A T C G A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGATGTCACG
VGCTGWCAVB
 C G T A C T A G T G C A A C G T A C T G A G C T A G T C C G T A A G T C A T C G
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AGATGTCACG
--NTGTCAN-
 C G T A C T A G T G C A A C G T A C T G A G C T A G T C C G T A A G T C A T C G
A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AGATGTCACG--
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C G T C G T A C T A G T G C A A C G T A C T G A G C T A G T C C G T A A G T C A T C G A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGATGTCACG
AGRGGTCA--
 C G T A C T A G T G C A A C G T A C T G A G C T A G T C C G T A A G T C A T C G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

Arntl/MA0603.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AGATGTCACG---
---GGTCACGTGC
 C G T A C T A G T G C A A C G T A C T G A G C T A G T C C G T A A G T C A T C G A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C