Information for 12-RATWGAMTTYAWA (Motif 9)

T C G A C G T A C G A T C G T A A C T G C G T A G T C A A C G T A C G T A G T C C G T A C G A T C G T A
Reverse Opposite:
A C G T C G T A A C G T C T A G C G T A C G T A A C G T A C G T A G T C C G A T G C T A A C G T A G C T
p-value:1e-66
log p-value:-1.527e+02
Information Content per bp:1.845
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif11.80%
Number of Background Sequences with motif31.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets44.3 +/- 31.6bp
Average Position of motif in Background51.7 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---RATWGAMTTYAWA
NNNTATTGAATTGNNN
 A C G T A C G T A C G T T C G A C G T A C G A T C G T A A C T G C G T A G T C A A C G T A C G T A G T C C G T A C G A T C G T A
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:RATWGAMTTYAWA-
-----NATTCAAAT
 T C G A C G T A C G A T C G T A A C T G C G T A G T C A A C G T A C G T A G T C C G T A C G A T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:RATWGAMTTYAWA
--TTGACTTTT--
 T C G A C G T A C G A T C G T A A C T G C G T A G T C A A C G T A C G T A G T C C G T A C G A T C G T A
A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RATWGAMTTYAWA--
GGACTGAATTCATGCC
 A C G T T C G A C G T A C G A T C G T A A C T G C G T A G T C A A C G T A C G T A G T C C G T A C G A T C G T A A C G T A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--RATWGAMTTYAWA
NTAATBNAATTA---
 A C G T A C G T T C G A C G T A C G A T C G T A A C T G C G T A G T C A A C G T A C G T A G T C C G T A C G A T C G T A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RATWGAMTTYAWA
---CGGTTTCAAA
 T C G A C G T A C G A T C G T A A C T G C G T A G T C A A C G T A C G T A G T C C G T A C G A T C G T A
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RATWGAMTTYAWA
-ATTGATTYND--
 T C G A C G T A C G A T C G T A A C T G C G T A G T C A A C G T A C G T A G T C C G T A C G A T C G T A
A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:RATWGAMTTYAWA--
-----ACWTCAAAGG
 T C G A C G T A C G A T C G T A A C T G C G T A G T C A A C G T A C G T A G T C C G T A C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.57
Offset:5
Orientation:forward strand
Alignment:RATWGAMTTYAWA--
-----ACATCAAAGG
 T C G A C G T A C G A T C G T A A C T G C G T A G T C A A C G T A C G T A G T C C G T A C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-RATWGAMTTYAWA-
CCATTGTATGCAAAT
 A C G T T C G A C G T A C G A T C G T A A C T G C G T A G T C A A C G T A C G T A G T C C G T A C G A T C G T A A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T