Information for 23-CCCAAAATCA (Motif 22)

A T G C A G T C A G T C C G T A C G T A G T C A C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C T G A C T G A T C G
p-value:1e-6
log p-value:-1.523e+01
Information Content per bp:1.944
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.64%
Number of Background Sequences with motif18.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets62.2 +/- 23.4bp
Average Position of motif in Background40.7 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1/MA0038.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CCCAAAATCA---
---CAAATCACTG
 A T G C A G T C A G T C C G T A C G T A G T C A C G T A A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCCAAAATCA-----
AAGGCGAAATCATCGCA
 A C G T A C G T A T G C A G T C A G T C C G T A C G T A G T C A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCCAAAATCA
GGCCATAAATCA
 A C G T A C G T A T G C A G T C A G T C C G T A C G T A G T C A C G T A A C G T A G T C C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCCAAAATCA-
GGCCATAAATCAC
 A C G T A C G T A T G C A G T C A G T C C G T A C G T A G T C A C G T A A C G T A G T C C G T A A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCCAAAATCA
GCCATAAATCA
 A C G T A T G C A G T C A G T C C G T A C G T A G T C A C G T A A C G T A G T C C G T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCCAAAATCA-----
TGCCAAAATAAACANN
 A C G T A T G C A G T C A G T C C G T A C G T A G T C A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCCAAAATCA-
---CCAATCAA
 A T G C A G T C A G T C C G T A C G T A G T C A C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

ONECUT3/MA0757.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCCAAAATCA-----
-AAAAAATCAATAAT
 A T G C A G T C A G T C C G T A C G T A G T C A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

Nr2e1/MA0676.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCCAAAATCA-
--AAAAGTCAA
 A T G C A G T C A G T C C G T A C G T A G T C A C G T A A C G T A G T C C G T A A C G T
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CCCAAAATCA-----
----AAATCACAGCA
 A T G C A G T C A G T C C G T A C G T A G T C A C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A