Information for 19-GRCCATATAA (Motif 16)

A C T G C T A G G T A C A G T C C G T A A C G T C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T C G T A C G A T A C T G A C T G A G T C A G T C
p-value:1e-11
log p-value:-2.572e+01
Information Content per bp:1.908
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif23.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets46.4 +/- 27.8bp
Average Position of motif in Background43.7 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SRF/MA0083.3/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GRCCATATAA-----
TGACCATATATGGTCA
 A C G T A C T G C T A G G T A C A G T C C G T A A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GRCCATATAA-----
ACGGCCATAAAATTAAT
 A C G T A C G T A C T G C T A G G T A C A G T C C G T A A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GRCCATATAA
AAGCCATAAAA
 A C G T A C T G C T A G G T A C A G T C C G T A A C G T C G T A A C G T C G T A C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GRCCATATAA---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C T G C T A G G T A C A G T C C G T A A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GRCCATATAA----
AGAGCCATAAAATTCG
 A C G T A C G T A C T G C T A G G T A C A G T C C G T A A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GRCCATATAA--
TNCCATATATGG
 A C T G C T A G G T A C A G T C C G T A A C G T C G T A A C G T C G T A C G T A A C G T A C G T
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GRCCATATAA---
TAAGGTAATAAAATTA
 A C G T A C G T A C G T A C T G C T A G G T A C A G T C C G T A A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GRCCATATAA-
-GTCATAAAAN
 A C T G C T A G G T A C A G T C C G T A A C G T C G T A A C G T C G T A C G T A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GRCCATATAA--
GNCTATAAAAGG
 A C T G C T A G G T A C A G T C C G T A A C G T C G T A A C G T C G T A C G T A A C G T A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GRCCATATAA
-GCAATAAAA
 A C T G C T A G G T A C A G T C C G T A A C G T C G T A A C G T C G T A C G T A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A