Information for 2-RTTCACACCA (Motif 2)

T C A G C G A T A C G T A T G C G C T A A G T C G T C A A T G C G T A C C G T A
Reverse Opposite:
G C A T C A T G A T C G A C G T A C T G C G A T A T C G G T C A G C T A A G T C
p-value:1e-20
log p-value:-4.828e+01
Information Content per bp:1.754
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.52%
Number of Background Sequences with motif296.5
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets51.6 +/- 23.1bp
Average Position of motif in Background52.0 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX21/MA0690.1/Jaspar

Match Rank:1
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:RTTCACACCA-
-TTCACACCTT
 T C A G C G A T A C G T A T G C G C T A A G T C G T C A A T G C G T A C C G T A A C G T
A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T

MGA/MA0801.1/Jaspar

Match Rank:2
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:RTTCACACCA
--TCACACCT
 T C A G C G A T A C G T A T G C G C T A A G T C G T C A A T G C G T A C C G T A
A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

EOMES/MA0800.1/Jaspar

Match Rank:3
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--RTTCACACCA-
NTTTTCACACCTT
 A C G T A C G T T C A G C G A T A C G T A T G C G C T A A G T C G T C A A T G C G T A C C G T A A C G T
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

TBX1/MA0805.1/Jaspar

Match Rank:4
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:RTTCACACCA
--TCACACCT
 T C A G C G A T A C G T A T G C G C T A A G T C G T C A A T G C G T A C C G T A
A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T

TBR1/MA0802.1/Jaspar

Match Rank:5
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:RTTCACACCA
TTTCACACCT
 T C A G C G A T A C G T A T G C G C T A A G T C G T C A A T G C G T A C C G T A
C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---RTTCACACCA----
NNTTTTCACACCTTNNN
 A C G T A C G T A C G T T C A G C G A T A C G T A T G C G C T A A G T C G T C A A T G C G T A C C G T A A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

TBX15/MA0803.1/Jaspar

Match Rank:7
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:RTTCACACCA
--TCACACCT
 T C A G C G A T A C G T A T G C G C T A A G T C G T C A A T G C G T A C C G T A
A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T

TBX20/MA0689.1/Jaspar

Match Rank:8
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:RTTCACACCA-
CTTCACACCTA
 T C A G C G A T A C G T A T G C G C T A A G T C G T C A A T G C G T A C C G T A A C G T
A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A

TBX2/MA0688.1/Jaspar

Match Rank:9
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:RTTCACACCA-
TTTCACACCTN
 T C A G C G A T A C G T A T G C G C T A A G T C G T C A A T G C G T A C C G T A A C G T
G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:10
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:RTTCACACCA
KTTCACACCT
 T C A G C G A T A C G T A T G C G C T A A G T C G T C A A T G C G T A C C G T A
C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T