Information for 4-TTTTTGTGAG (Motif 9)

A C G T A C G T A C G T A C G T C G A T C T A G C G A T C T A G C T G A A T C G
Reverse Opposite:
A T G C A G C T A G T C C G T A G A T C C G T A C G T A G T C A C G T A C G T A
p-value:1e-6
log p-value:-1.595e+01
Information Content per bp:1.853
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif3.56%
Number of Background Sequences with motif150.4
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets61.1 +/- 23.3bp
Average Position of motif in Background52.7 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTGTGAG----
NAATTTTACGAGNTNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G A T C T A G C T G A A T C G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TTTTTGTGAG-
-TTTTATKRGG
 A C G T A C G T A C G T A C G T C G A T C T A G C G A T C T A G C T G A A T C G A C G T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTGTGAG--
GTNTTGTTGTGANNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G A T C T A G C T G A A T C G A C G T A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTTTTGTGAG-
NTTTTACGAGN
 A C G T A C G T A C G T A C G T C G A T C T A G C G A T C T A G C T G A A T C G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTTTTGTGAG
NTTTTATTGG
 A C G T A C G T A C G T A C G T C G A T C T A G C G A T C T A G C T G A A T C G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTGTGAG----
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G A T C T A G C T G A A T C G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTTTTGTGAG-
-TTTTATTRGN
 A C G T A C G T A C G T A C G T C G A T C T A G C G A T C T A G C T G A A T C G A C G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

PB0116.1_Elf3_2/Jaspar

Match Rank:8
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------TTTTTGTGAG-
GNATTTTTTTTTTGANC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G A T C T A G C T G A A T C G A C G T
C T A G G C T A C T G A A C G T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C A G T C A T G T G C A T C G A G T A C

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTGTGAG--
TTTTTTTTCNNGTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G A T C T A G C T G A A T C G A C G T A C G T
G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTTTTGTGAG
NTTTTACGAC
 A C G T A C G T A C G T A C G T C G A T C T A G C G A T C T A G C T G A A T C G
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C