Information for 6-AGCTACTGTTCAT (Motif 11)

C G T A A C T G A G T C A C G T C G T A A G T C A C G T A C T G A C G T A C G T A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C G T A C G T A A G T C C G T A A C T G A C G T C G T A A C T G A G T C A C G T
p-value:1e-6
log p-value:-1.479e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.7 +/- 19.3bp
Average Position of motif in Background42.6 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---AGCTACTGTTCAT
CNNNGCTACTGTANNN
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A G T C A C G T A C T G A C G T A C G T A G T C C G T A A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---AGCTACTGTTCAT
TNNTGCTACTGTNNNN
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A G T C A C G T A C T G A C G T A C G T A G T C C G T A A C G T
G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

Foxq1/MA0040.1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGCTACTGTTCAT-
---TATTGTTTATT
 C G T A A C T G A G T C A C G T C G T A A G T C A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGCTACTGTTCAT
--CCATTGTTC--
 C G T A A C T G A G T C A C G T C G T A A G T C A C G T A C T G A C G T A C G T A G T C C G T A A C G T
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AGCTACTGTTCAT----
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T C G T A A G T C A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

PB0065.1_Sox15_1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGCTACTGTTCAT--
ANNTCTATTGTTCNNNA
 A C G T A C G T C G T A A C T G A G T C A C G T C G T A A G T C A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGCTACTGTTCAT--
GTATCTATTGTTCTTTA
 A C G T A C G T C G T A A C T G A G T C A C G T C G T A A G T C A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCTACTGTTCAT---
AATCAATTGTTCCGCTA
 A C G T C G T A A C T G A G T C A C G T C G T A A G T C A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGCTACTGTTCAT---
CNNNTATTGTTCNNNNN
 A C G T C G T A A C T G A G T C A C G T C G T A A G T C A C G T A C T G A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGCTACTGTTCAT
-NCCATTGTTC--
 C G T A A C T G A G T C A C G T C G T A A G T C A C G T A C T G A C G T A C G T A G T C C G T A A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T