Information for 5-CAGRACCATGGACAGC (Motif 5)

A G T C C G T A A C T G T C G A C G T A A G T C A G T C C T G A G A C T A C T G A C T G C G T A A T G C C G T A A C T G G T A C
Reverse Opposite:
A C T G A G T C A C G T T A C G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A G C T A G T C A C G T A C T G
p-value:1e-32
log p-value:-7.552e+01
Information Content per bp:1.851
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.9 +/- 14.8bp
Average Position of motif in Background30.3 +/- 5.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CAGRACCATGGACAGC---
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A G T C C G T A A C T G T C G A C G T A A G T C A G T C C T G A G A C T A C T G A C T G C G T A A T G C C G T A A C T G G T A C A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CAGRACCATGGACAGC---
TCAGCACCATGGACAGCTCC
 A C G T A G T C C G T A A C T G T C G A C G T A A G T C A G T C C T G A G A C T A C T G A C T G C G T A A T G C C G T A A C T G G T A C A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CAGRACCATGGACAGC
-----CCAGGAACAG-
 A G T C C G T A A C T G T C G A C G T A A G T C A G T C C T G A G A C T A C T G A C T G C G T A A T G C C G T A A C T G G T A C
A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CAGRACCATGGACAGC
--GAACAATGGN----
 A G T C C G T A A C T G T C G A C G T A A G T C A G T C C T G A G A C T A C T G A C T G C G T A A T G C C G T A A C T G G T A C
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CAGRACCATGGACAGC
-AAAACAATGG-----
 A G T C C G T A A C T G T C G A C G T A A G T C A G T C C T G A G A C T A C T G A C T G C G T A A T G C C G T A A C T G G T A C
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.50
Offset:8
Orientation:forward strand
Alignment:CAGRACCATGGACAGC
--------TTGACAGC
 A G T C C G T A A C T G T C G A C G T A A G T C A G T C C T G A G A C T A C T G A C T G C G T A A T G C C G T A A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.49
Offset:5
Orientation:forward strand
Alignment:CAGRACCATGGACAGC
-----CAAAGGTCAG-
 A G T C C G T A A C T G T C G A C G T A A G T C A G T C C T G A G A C T A C T G A C T G C G T A A T G C C G T A A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:CAGRACCATGGACAGC
---AACAAAGG-----
 A G T C C G T A A C T G T C G A C G T A A G T C A G T C C T G A G A C T A C T G A C T G C G T A A T G C C G T A A C T G G T A C
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--CAGRACCATGGACAGC
ATAAGAACAAAGGACTA-
 A C G T A C G T A G T C C G T A A C T G T C G A C G T A A G T C A G T C C T G A G A C T A C T G A C T G C G T A A T G C C G T A A C T G G T A C
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:CAGRACCATGGACAGC
-VRAACAATGG-----
 A G T C C G T A A C T G T C G A C G T A A G T C A G T C C T G A G A C T A C T G A C T G C G T A A T G C C G T A A C T G G T A C
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T