Information for 7-TGGTTAGMCGCCG (Motif 6)

A C G T A C T G A C T G A G C T A C G T C G T A A T C G G T A C A G T C A C T G A T G C A G T C A C T G
Reverse Opposite:
A G T C A C T G A T C G A G T C A C T G C A G T A T G C A C G T T C G A C T G A A G T C A G T C C G T A
p-value:1e-10
log p-value:-2.502e+01
Information Content per bp:1.856
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.4 +/- 29.3bp
Average Position of motif in Background39.4 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGGTTAGMCGCCG--
NNTTTANNCGACGNA
 A C G T A C T G A C T G A G C T A C G T C G T A A T C G G T A C A G T C A C T G A T G C A G T C A C T G A C G T A C G T
T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGGTTAGMCGCCG
TGTCTAGACG---
 A C G T A C T G A C T G A G C T A C G T C G T A A T C G G T A C A G T C A C T G A T G C A G T C A C T G
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGGTTAGMCGCCG----
NNNNTTGGCGCCGANNN
 A C G T A C T G A C T G A G C T A C G T C G T A A T C G G T A C A G T C A C T G A T G C A G T C A C T G A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGGTTAGMCGCCG
CTGGCAGNCTGCCA
 A C G T A C G T A C T G A C T G A G C T A C G T C G T A A T C G G T A C A G T C A C T G A T G C A G T C A C T G
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TGGTTAGMCGCCG
CTGTGGTTTN------
 A C G T A C G T A C G T A C G T A C T G A C T G A G C T A C G T C G T A A T C G G T A C A G T C A C T G A T G C A G T C A C T G
G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTAGMCGCCG
TTGGCATGGTGCCA
 A C G T A C G T A C T G A C T G A G C T A C G T C G T A A T C G G T A C A G T C A C T G A T G C A G T C A C T G
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

HMBOX1/MA0895.1/Jaspar

Match Rank:7
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--TGGTTAGMCGCCG
ACTAGTTAAC-----
 A C G T A C G T A C G T A C T G A C T G A G C T A C G T C G T A A T C G G T A C A G T C A C T G A T G C A G T C A C T G
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----TGGTTAGMCGCCG
GCTGTGGTTT-------
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G C T A C G T C G T A A T C G G T A C A G T C A C T G A T G C A G T C A C T G
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----TGGTTAGMCGCCG
TGATTGGCTANN-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G C T A C G T C G T A A T C G G T A C A G T C A C T G A T G C A G T C A C T G
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTAGMCGCCG--
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A C T G A G C T A C G T C G T A A T C G G T A C A G T C A C T G A T G C A G T C A C T G A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G