Information for 9-CSGGGAAGCYCCC (Motif 15)

A G T C A T C G C T A G A C T G A C T G C G T A T G C A C T A G A T G C G A C T A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G C T G A T A C G G A T C A C G T A C G T A G T C A G T C G A T C A T G C T C A G
p-value:1e-11
log p-value:-2.552e+01
Information Content per bp:1.716
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.97%
Number of Background Sequences with motif188.5
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets47.0 +/- 26.1bp
Average Position of motif in Background52.0 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:CSGGGAAGCYCCC-
--GGGAAATCCCCN
 A G T C A T C G C T A G A C T G A C T G C G T A T G C A C T A G A T G C G A C T A G T C A G T C A G T C A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.86
Offset:3
Orientation:reverse strand
Alignment:CSGGGAAGCYCCC
---GGAAATCCCC
 A G T C A T C G C T A G A C T G A C T G C G T A T G C A C T A G A T G C G A C T A G T C A G T C A G T C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.85
Offset:3
Orientation:reverse strand
Alignment:CSGGGAAGCYCCC
---GGAAANCCCC
 A G T C A T C G C T A G A C T G A C T G C G T A T G C A C T A G A T G C G A C T A G T C A G T C A G T C
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.84
Offset:3
Orientation:reverse strand
Alignment:CSGGGAAGCYCCC
---GGAAATTCCC
 A G T C A T C G C T A G A C T G A C T G C G T A T G C A C T A G A T G C G A C T A G T C A G T C A G T C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.82
Offset:3
Orientation:forward strand
Alignment:CSGGGAAGCYCCC
---GGAAATTCCC
 A G T C A T C G C T A G A C T G A C T G C G T A T G C A C T A G A T G C G A C T A G T C A G T C A G T C
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CSGGGAAGCYCCC-
-AGGGGATTCCCCT
 A G T C A T C G C T A G A C T G A C T G C G T A T G C A C T A G A T G C G A C T A G T C A G T C A G T C A C G T
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CSGGGAAGCYCCC
-GGGGGAATCCCC
 A G T C A T C G C T A G A C T G A C T G C G T A T G C A C T A G A T G C G A C T A G T C A G T C A G T C
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CSGGGAAGCYCCC-
-AGGGGAATCCCCT
 A G T C A T C G C T A G A C T G A C T G C G T A T G C A C T A G A T G C G A C T A G T C A G T C A G T C A C G T
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CSGGGAAGCYCCC------
--AGGAGACCCCCAATTTG
 A G T C A T C G C T A G A C T G A C T G C G T A T G C A C T A G A T G C G A C T A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CSGGGAAGCYCCC
AVCAGGAAGT----
 A C G T A G T C A T C G C T A G A C T G A C T G C G T A T G C A C T A G A T G C G A C T A G T C A G T C A G T C
C G T A T A G C T A G C T G C A A C T G C T A G C G T A C G T A T C A G G A C T A C G T A C G T A C G T A C G T