Information for 1-VCCACAGGGARHYTBB (Motif 4)

T G A C A T G C A G T C G T C A T A G C G T C A C T A G A C T G C T A G T C G A T C A G G C A T A G C T G A C T A C G T A T G C
Reverse Opposite:
T A C G T G C A C T G A T C G A C G A T A G T C A G C T A G T C G T A C G A T C A C G T A T C G C A G T A C T G T A C G A C T G
p-value:1e-19
log p-value:-4.596e+01
Information Content per bp:1.571
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif6.55%
Number of Background Sequences with motif654.1
Percentage of Background Sequences with motif1.36%
Average Position of motif in Targets43.7 +/- 25.9bp
Average Position of motif in Background51.1 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--VCCACAGGGARHYTBB
AAACCACAGAN-------
 A C G T A C G T T G A C A T G C A G T C G T C A T A G C G T C A C T A G A C T G C T A G T C G A T C A G G C A T A G C T G A C T A C G T A T G C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---VCCACAGGGARHYTBB
NWAACCACADNN-------
 A C G T A C G T A C G T T G A C A T G C A G T C G T C A T A G C G T C A C T A G A C T G C T A G T C G A T C A G G C A T A G C T G A C T A C G T A T G C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-VCCACAGGGARHYTBB
GTCCCCAGGGGA-----
 A C G T T G A C A T G C A G T C G T C A T A G C G T C A C T A G A C T G C T A G T C G A T C A G G C A T A G C T G A C T A C G T A T G C
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---VCCACAGGGARHYTBB
NAAACCACAG---------
 A C G T A C G T A C G T T G A C A T G C A G T C G T C A T A G C G T C A C T A G A C T G C T A G T C G A T C A G G C A T A G C T G A C T A C G T A T G C
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--VCCACAGGGARHYTBB
AAACCACAGC--------
 A C G T A C G T T G A C A T G C A G T C G T C A T A G C G T C A C T A G A C T G C T A G T C G A T C A G G C A T A G C T G A C T A C G T A T G C
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-VCCACAGGGARHYTBB
AAGCACATGG-------
 A C G T T G A C A T G C A G T C G T C A T A G C G T C A C T A G A C T G C T A G T C G A T C A G G C A T A G C T G A C T A C G T A T G C
T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:VCCACAGGGARHYTBB
---ACAAAGGNBCCT-
 T G A C A T G C A G T C G T C A T A G C G T C A C T A G A C T G C T A G T C G A T C A G G C A T A G C T G A C T A C G T A T G C
A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:VCCACAGGGARHYTBB
GCCTCAGGGCAT----
 T G A C A T G C A G T C G T C A T A G C G T C A C T A G A C T G C T A G T C G A T C A G G C A T A G C T G A C T A C G T A T G C
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-VCCACAGGGARHYTBB
DCHCAGCAGGRGGCC--
 A C G T T G A C A T G C A G T C G T C A T A G C G T C A C T A G A C T G C T A G T C G A T C A G G C A T A G C T G A C T A C G T A T G C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---VCCACAGGGARHYTBB
NTCCCCTCAGGGANT----
 A C G T A C G T A C G T T G A C A T G C A G T C G T C A T A G C G T C A C T A G A C T G C T A G T C G A T C A G G C A T A G C T G A C T A C G T A T G C
G A C T C G A T G A T C A T G C G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A C G C G T A G C T A G C A T A C G T A C G T A C G T A C G T