Information for 13-GCAGAYCTATCGA (Motif 17)

A C T G A G T C C G T A A C T G C G T A A G C T A T G C C G A T G T C A A C G T A T G C A T C G C G T A
Reverse Opposite:
A C G T A T G C A T C G C G T A A C G T C G T A A T C G T C A G A C G T A G T C A C G T A C T G A G T C
p-value:1e-8
log p-value:-1.968e+01
Information Content per bp:1.854
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.4 +/- 20.1bp
Average Position of motif in Background39.7 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GCAGAYCTATCGA
ATGCCAGACN------
 A C G T A C G T A C G T A C T G A G T C C G T A A C T G C G T A A G C T A T G C C G A T G T C A A C G T A T G C A T C G C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCAGAYCTATCGA
CCAGACRSVB---
 A C T G A G T C C G T A A C T G C G T A A G C T A T G C C G A T G T C A A C G T A T G C A T C G C G T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GCAGAYCTATCGA---
------NTATYGATCH
 A C T G A G T C C G T A A C T G C G T A A G C T A T G C C G A T G T C A A C G T A T G C A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

CUX1/MA0754.1/Jaspar

Match Rank:4
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:GCAGAYCTATCGA---
------NTATCGATTA
 A C T G A G T C C G T A A C T G C G T A A G C T A T G C C G A T G T C A A C G T A T G C A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

CUX2/MA0755.1/Jaspar

Match Rank:5
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:GCAGAYCTATCGA---
------TTATCGATTA
 A C T G A G T C C G T A A C T G C G T A A G C T A T G C C G A T G T C A A C G T A T G C A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----GCAGAYCTATCGA
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G C G T A A G C T A T G C C G A T G T C A A C G T A T G C A T C G C G T A
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

PB0144.1_Lef1_2/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GCAGAYCTATCGA---
GAAGATCAATCACTTA
 A C T G A G T C C G T A A C T G C G T A A G C T A T G C C G A T G T C A A C G T A T G C A T C G C G T A A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:8
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GCAGAYCTATCGA----
--TGACCTTTTGACCTC
 A C T G A G T C C G T A A C T G C G T A A G C T A T G C C G A T G T C A A C G T A T G C A T C G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

POL005.1_DPE/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GCAGAYCTATCGA
GAAGATGTT----
 A C T G A G T C C G T A A C T G C G T A A G C T A T G C C G A T G T C A A C G T A T G C A T C G C G T A
T C A G G T C A C T G A A T C G G C T A G A C T T A C G G A C T G A C T A C G T A C G T A C G T A C G T

PB0197.1_Zfp105_2/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GCAGAYCTATCGA-----
-NAAANTTATTGAANCAN
 A C T G A G T C C G T A A C T G C G T A A G C T A T G C C G A T G T C A A C G T A T G C A T C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T