Information for 23-AGGGCCCGGTGAA (Motif 42)

C G T A A C T G A C T G A C T G A G T C A G T C A G T C C T A G A C T G A G C T A C T G C G T A C G T A
Reverse Opposite:
C G A T A C G T A G T C C T G A A G T C A G T C A C T G C T A G A C T G A G T C A G T C A G T C A C G T
p-value:1e-3
log p-value:-8.959e+00
Information Content per bp:1.933
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.7 +/- 38.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGGGCCCGGTGAA
--GGCGCGCT---
 C G T A A C T G A C T G A C T G A G T C A G T C A G T C C T A G A C T G A G C T A C T G C G T A C G T A
A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T

PB0039.1_Klf7_1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGGGCCCGGTGAA
NNAGGGGCGGGGTNNA
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A G T C A G T C A G T C C T A G A C T G A G C T A C T G C G T A C G T A
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGGGCCCGGTGAA--
AGGNCANNGTGACCT
 C G T A A C T G A C T G A C T G A G T C A G T C A G T C C T A G A C T G A G C T A C T G C G T A C G T A A C G T A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGGGCCCGGTGAA-
NAGGTCACNNTGACC
 A C G T C G T A A C T G A C T G A C T G A G T C A G T C A G T C C T A G A C T G A G C T A C T G C G T A C G T A A C G T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

ESR1/MA0112.3/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGGGCCCGGTGAA---
AAGGTCACGGTGACCTG
 A C G T C G T A A C T G A C T G A C T G A G T C A G T C A G T C C T A G A C T G A G C T A C T G C G T A C G T A A C G T A C G T A C G T
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGGGCCCGGTGAA
-AGGCCTAG----
 C G T A A C T G A C T G A C T G A G T C A G T C A G T C C T A G A C T G A G C T A C T G C G T A C G T A
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AGGGCCCGGTGAA
--TGCCCAGNHW-
 C G T A A C T G A C T G A C T G A G T C A G T C A G T C C T A G A C T G A G C T A C T G C G T A C G T A
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGGGCCCGGTGAA
CAGGCCNNGGCCNN
 A C G T C G T A A C T G A C T G A C T G A G T C A G T C A G T C C T A G A C T G A G C T A C T G C G T A C G T A
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

PPARG/MA0066.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGGGCCCGGTGAA-----
GTAGGTCACGGTGACCTACT
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C A G T C A G T C C T A G A C T G A G C T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

PB0157.1_Rara_2/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGGGCCCGGTGAA---
AGAGCGGGGTCAAGTA
 C G T A A C T G A C T G A C T G A G T C A G T C A G T C C T A G A C T G A G C T A C T G C G T A C G T A A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A