Information for 7-STGGGTGTTNCCCACA (Motif 5)

A T C G A C G T A C T G A C T G A C T G C A G T T A C G A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C G T C A
Reverse Opposite:
A C G T A C T G C G A T A C T G A C T G A C T G A C T G C G T A C G T A A T G C G C T A A G T C G T A C G T A C C G T A A T C G
p-value:1e-13
log p-value:-3.152e+01
Information Content per bp:1.817
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.3 +/- 23.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:STGGGTGTTNCCCACA
--GGGGATTTCC----
 A T C G A C G T A C T G A C T G A C T G C A G T T A C G A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C G T C A
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:STGGGTGTTNCCCACA
-NGGGGATTTCCC---
 A T C G A C G T A C T G A C T G A C T G C A G T T A C G A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C G T C A
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:STGGGTGTTNCCCACA
--GGGAATTTCC----
 A T C G A C G T A C T G A C T G A C T G C A G T T A C G A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C G T C A
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:STGGGTGTTNCCCACA
-AGGGGATTCCCCT--
 A T C G A C G T A C T G A C T G A C T G C A G T T A C G A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C G T C A
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:STGGGTGTTNCCCACA
--GGGGATTCCCCC--
 A T C G A C G T A C T G A C T G A C T G C A G T T A C G A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C G T C A
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:STGGGTGTTNCCCACA
--GGGGATTTCC----
 A T C G A C G T A C T G A C T G A C T G C A G T T A C G A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C G T C A
A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.59
Offset:6
Orientation:forward strand
Alignment:STGGGTGTTNCCCACA
------HTTTCCCASG
 A T C G A C G T A C T G A C T G A C T G C A G T T A C G A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:STGGGTGTTNCCCACA
--GGGAATTTCC----
 A T C G A C G T A C T G A C T G A C T G C A G T T A C G A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C G T C A
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.57
Offset:7
Orientation:forward strand
Alignment:STGGGTGTTNCCCACA
-------CTGCCCGCA
 A T C G A C G T A C T G A C T G A C T G C A G T T A C G A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-STGGGTGTTNCCCACA
CGTGGGTGGTCC-----
 A C G T A T C G A C G T A C T G A C T G A C T G C A G T T A C G A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C G T C A
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T A C G T A C G T A C G T A C G T