Information for 25-AGGCACTCATWCG (Motif 27)

C G T A A T C G C A T G A T G C C G T A A G T C C G A T A T G C G C T A G A C T C G T A G T A C A C T G
Reverse Opposite:
A G T C A C T G G C A T C T G A C A G T A T C G C G T A A C T G A C G T A T C G G A T C A T G C A C G T
p-value:1e-5
log p-value:-1.379e+01
Information Content per bp:1.734
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif32.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets48.6 +/- 33.6bp
Average Position of motif in Background46.3 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGCACTCATWCG
AGCCACTCAAG--
 C G T A A T C G C A T G A T G C C G T A A G T C C G A T A T G C G C T A G A C T C G T A G T A C A C T G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGCACTCATWCG
AAGCACTTAA---
 C G T A A T C G C A T G A T G C C G T A A G T C C G A T A T G C G C T A G A C T C G T A G T A C A C T G
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGCACTCATWCG
AASCACTCAA---
 C G T A A T C G C A T G A T G C C G T A A G T C C G A T A T G C G C T A G A C T C G T A G T A C A C T G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGCACTCATWCG
MRSCACTYAA---
 C G T A A T C G C A T G A T G C C G T A A G T C C G A T A T G C G C T A G A C T C G T A G T A C A C T G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGCACTCATWCG
RGGGCACTAACY--
 A C G T C G T A A T C G C A T G A T G C C G T A A G T C C G A T A T G C G C T A G A C T C G T A G T A C A C T G
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGGCACTCATWCG-
AGCGGCACACACGCAA
 A C G T A C G T C G T A A T C G C A T G A T G C C G T A A G T C C G A T A T G C G C T A G A C T C G T A G T A C A C T G A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGGCACTCATWCG
NNGGCCACGCCTTTN
 A C G T A C G T C G T A A T C G C A T G A T G C C G T A A G T C C G A T A T G C G C T A G A C T C G T A G T A C A C T G
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGGCACTCATWCG
-RSCACTYRAG--
 C G T A A T C G C A T G A T G C C G T A A G T C C G A T A T G C G C T A G A C T C G T A G T A C A C T G
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGGCACTCATWCG--
TACGAGACTCCTCTAAC
 A C G T A C G T C G T A A T C G C A T G A T G C C G T A A G T C C G A T A T G C G C T A G A C T C G T A G T A C A C T G A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

JUND/MA0491.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGGCACTCATWCG
GGTGACTCATC--
 C G T A A T C G C A T G A T G C C G T A A G T C C G A T A T G C G C T A G A C T C G T A G T A C A C T G
C T A G T C A G A C G T A C T G C G T A A T G C A C G T G T A C C G T A A G C T T A G C A C G T A C G T