Information for 12-SNGGCYTCTTSTTCCC (Motif 18)

A T G C T A G C A C T G C T A G A G T C A G C T A C G T A G T C A G C T A C G T A T G C A C G T A C G T A G T C A G T C A G T C
Reverse Opposite:
C T A G A C T G C T A G G T C A C G T A A T C G G T C A C T G A A C T G C G T A C T G A A C T G G A T C G T A C A T C G A T C G
p-value:1e-9
log p-value:-2.240e+01
Information Content per bp:1.768
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif15.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets39.8 +/- 25.9bp
Average Position of motif in Background50.8 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:SNGGCYTCTTSTTCCC
---ACTTCCTGTT---
 A T G C T A G C A C T G C T A G A G T C A G C T A C G T A G T C A G C T A C G T A T G C A C G T A C G T A G T C A G T C A G T C
A C G T A C G T A C G T T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:SNGGCYTCTTSTTCCC
---GKMTCADRTTWC-
 A T G C T A G C A C T G C T A G A G T C A G C T A C G T A G T C A G C T A C G T A T G C A C G T A C G T A G T C A G T C A G T C
A C G T A C G T A C G T C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:SNGGCYTCTTSTTCCC
----CAGCTGTTTCCT
 A T G C T A G C A C T G C T A G A G T C A G C T A C G T A G T C A G C T A C G T A T G C A C G T A C G T A G T C A G T C A G T C
A C G T A C G T A C G T A C G T G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:SNGGCYTCTTSTTCCC
---GCTTCC-------
 A T G C T A G C A C T G C T A G A G T C A G C T A C G T A G T C A G C T A C G T A T G C A C G T A C G T A G T C A G T C A G T C
A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:SNGGCYTCTTSTTCCC
---GKVTCADRTTWC-
 A T G C T A G C A C T G C T A G A G T C A G C T A C G T A G T C A G C T A C G T A T G C A C G T A C G T A G T C A G T C A G T C
A C G T A C G T A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

SPIC/MA0687.1/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:SNGGCYTCTTSTTCCC
--TACTTCCTCTTTTN
 A T G C T A G C A C T G C T A G A G T C A G C T A C G T A G T C A G C T A C G T A T G C A C G T A C G T A G T C A G T C A G T C
A C G T A C G T C A G T C G T A A G T C A C G T C G A T G T A C T A G C A C G T A T G C C G A T C A G T C A G T G A C T C A G T

ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:SNGGCYTCTTSTTCCC
---ACTTCCGGTT---
 A T G C T A G C A C T G C T A G A G T C A G C T A C G T A G T C A G C T A C G T A T G C A C G T A C G T A G T C A G T C A G T C
A C G T A C G T A C G T T C G A A G T C G C A T C G A T A G T C A G T C A C T G A T C G G A C T A G C T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---SNGGCYTCTTSTTCCC-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T G C T A G C A C T G C T A G A G T C A G C T A C G T A G T C A G C T A C G T A T G C A C G T A C G T A G T C A G T C A G T C A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:SNGGCYTCTTSTTCCC
-TGWCCTCARNTGACC
 A T G C T A G C A C T G C T A G A G T C A G C T A C G T A G T C A G C T A C G T A T G C A C G T A C G T A G T C A G T C A G T C
A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--SNGGCYTCTTSTTCCC-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A T G C T A G C A C T G C T A G A G T C A G C T A C G T A G T C A G C T A C G T A T G C A C G T A C G T A G T C A G T C A G T C A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A