Information for 5-GGGGAATTCC (Motif 5)

A C T G A T C G C A T G C T A G T C G A G C T A A C G T A G C T A T G C A G T C
Reverse Opposite:
A C T G T A C G T C G A T G C A C G A T A G C T G A T C G T A C T A G C T G A C
p-value:1e-15
log p-value:-3.648e+01
Information Content per bp:1.690
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif7.79%
Number of Background Sequences with motif1161.8
Percentage of Background Sequences with motif2.45%
Average Position of motif in Targets53.9 +/- 26.4bp
Average Position of motif in Background50.2 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-GGGGAATTCC-
NGGGGATTTCCC
 A C G T A C T G A T C G C A T G C T A G T C G A G C T A A C G T A G C T A T G C A G T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGGGAATTCC
GGGGATTTCC
 A C T G A T C G C A T G C T A G T C G A G C T A A C G T A G C T A T G C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

NFKB2/MA0778.1/Jaspar

Match Rank:3
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-GGGGAATTCC--
AGGGGAATCCCCT
 A C G T A C T G A T C G C A T G C T A G T C G A G C T A A C G T A G C T A T G C A G T C A C G T A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GGGGAATTCC-
GGGGGAATCCCC
 A C G T A C T G A T C G C A T G C T A G T C G A G C T A A C G T A G C T A T G C A G T C A C G T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GGGGAATTCC
GGGGATTTCC
 A C T G A T C G C A T G C T A G T C G A G C T A A C G T A G C T A T G C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:GGGGAATTCC-
-GGAAATTCCC
 A C T G A T C G C A T G C T A G T C G A G C T A A C G T A G C T A T G C A G T C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:GGGGAATTCC
GGGAATTTCC
 A C T G A T C G C A T G C T A G T C G A G C T A A C G T A G C T A T G C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GGGGAATTCC--
AGGGGAATCCCCT
 A C G T A C T G A T C G C A T G C T A G T C G A G C T A A C G T A G C T A T G C A G T C A C G T A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGGGAATTCC
TGGGGA-----
 A C G T A C T G A T C G C A T G C T A G T C G A G C T A A C G T A G C T A T G C A G T C
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GGGGAATTCC---
---GCATTCCAGN
 A C T G A T C G C A T G C T A G T C G A G C T A A C G T A G C T A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G