Information for 1-GCGCCCCCTVGTGGCC (Motif 3)

A T C G A G T C A C T G A T G C A T G C T G A C A G T C A G T C A G C T T C A G A T C G G A C T A C T G C T A G A G T C T A G C
Reverse Opposite:
A T C G C T A G A G T C A G T C C T G A A T G C A G T C C T G A A C T G T C A G A C T G A T C G A T C G G T A C C T A G T A G C
p-value:1e-20
log p-value:-4.741e+01
Information Content per bp:1.703
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.71%
Number of Background Sequences with motif78.1
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets49.1 +/- 26.7bp
Average Position of motif in Background53.4 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCCCCTVGTGGCC-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A T C G A G T C A C T G A T G C A T G C T G A C A G T C A G T C A G C T T C A G A T C G G A C T A C T G C T A G A G T C T A G C A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.88
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCCCCTVGTGGCC
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A C T G A T G C A T G C T G A C A G T C A G T C A G C T T C A G A T C G G A C T A C T G C T A G A G T C T A G C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---GCGCCCCCTVGTGGCC-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T C G A G T C A C T G A T G C A T G C T G A C A G T C A G T C A G C T T C A G A T C G G A C T A C T G C T A G A G T C T A G C A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCGCCCCCTVGTGGCC
GGTCCCGCCCCCTTCTC---
 A C G T A C G T A C G T A C G T A T C G A G T C A C T G A T G C A T G C T G A C A G T C A G T C A G C T T C A G A T C G G A C T A C T G C T A G A G T C T A G C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCGCCCCCTVGTGGCC
ANCGCGCGCCCTTNN----
 A C G T A C G T A C G T A T C G A G T C A C T G A T G C A T G C T G A C A G T C A G T C A G C T T C A G A T C G G A C T A C T G C T A G A G T C T A G C
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCGCCCCCTVGTGGCC
-GGCCYCCTGCTGDGH
 A T C G A G T C A C T G A T G C A T G C T G A C A G T C A G T C A G C T T C A G A T C G G A C T A C T G C T A G A G T C T A G C
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0101.1_Zic1_1/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCGCCCCCTVGTGGCC
--CCCCCCCGGGGGNN
 A T C G A G T C A C T G A T G C A T G C T G A C A G T C A G T C A G C T T C A G A T C G G A C T A C T G C T A G A G T C T A G C
A C G T A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PLAG1/MA0163.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCGCCCCCTVGTGGCC--
----CCCCCTTGGGCCCC
 A T C G A G T C A C T G A T G C A T G C T G A C A G T C A G T C A G C T T C A G A T C G G A C T A C T G C T A G A G T C T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GCGCCCCCTVGTGGCC
----TGCCCCCGGGCA
 A T C G A G T C A C T G A T G C A T G C T G A C A G T C A G T C A G C T T C A G A T C G G A C T A C T G C T A G A G T C T A G C
A C G T A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCGCCCCCTVGTGGCC
GCTCCGCCCMCY----
 A T C G A G T C A C T G A T G C A T G C T G A C A G T C A G T C A G C T T C A G A T C G G A C T A C T G C T A G A G T C T A G C
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T A C G T A C G T A C G T