Information for 4-GGGAAATYCCCMA (Motif 4)

C A T G C T A G C T A G C T G A C T G A G C T A C A G T G A C T G A T C G A T C G T A C G T A C C T G A
Reverse Opposite:
G A C T C A T G C A T G C T A G C T A G C T G A G T C A C G A T G A C T G A C T G A T C G A T C G T A C
p-value:1e-36
log p-value:-8.497e+01
Information Content per bp:1.597
Number of Target Sequences with motif87.0
Percentage of Target Sequences with motif10.88%
Number of Background Sequences with motif920.4
Percentage of Background Sequences with motif1.94%
Average Position of motif in Targets47.5 +/- 25.5bp
Average Position of motif in Background49.1 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:GGGAAATYCCCMA
GGGAAATCCCCN-
 C A T G C T A G C T A G C T G A C T G A G C T A C A G T G A C T G A T C G A T C G T A C G T A C C T G A
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:GGGAAATYCCCMA
-GGAAATCCCC--
 C A T G C T A G C T A G C T G A C T G A G C T A C A G T G A C T G A T C G A T C G T A C G T A C C T G A
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:GGGAAATYCCCMA
-GGAAATTCCC--
 C A T G C T A G C T A G C T G A C T G A G C T A C A G T G A C T G A T C G A T C G T A C G T A C C T G A
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GGGAAATYCCCMA
-GGAAATTCCC--
 C A T G C T A G C T A G C T G A C T G A G C T A C A G T G A C T G A T C G A T C G T A C G T A C C T G A
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-GGGAAATYCCCMA
AGGGGAATCCCCT-
 A C G T C A T G C T A G C T A G C T G A C T G A G C T A C A G T G A C T G A T C G A T C G T A C G T A C C T G A
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:GGGAAATYCCCMA
-GGAAANCCCC--
 C A T G C T A G C T A G C T G A C T G A G C T A C A G T G A C T G A T C G A T C G T A C G T A C C T G A
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GGGAAATYCCCMA
GGGGGAATCCCC--
 A C G T C A T G C T A G C T A G C T G A C T G A G C T A C A G T G A C T G A T C G A T C G T A C G T A C C T G A
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GGGAAATYCCCMA
AGGGGAATCCCCT-
 A C G T C A T G C T A G C T A G C T G A C T G A G C T A C A G T G A C T G A T C G A T C G T A C G T A C C T G A
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGGAAATYCCCMA--
AGGCTAATCCCCAANG
 A C G T C A T G C T A G C T A G C T G A C T G A G C T A C A G T G A C T G A T C G A T C G T A C G T A C C T G A A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGGAAATYCCCMA
TGGGGA--------
 A C G T C A T G C T A G C T A G C T G A C T G A G C T A C A G T G A C T G A T C G A T C G T A C G T A C C T G A
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T