Information for 1-HNVWGGGGNTTTCCYV (Motif 1)

G T C A C T A G T C G A G C T A C T A G A C T G A C T G C T A G T C A G C G A T A C G T A G C T A G T C G T A C G A T C T A G C
Reverse Opposite:
A T C G C T A G C A T G C T A G C T G A C G T A C G T A A G T C G A T C G T A C G T A C G A T C C G A T A G C T G A T C C A G T
p-value:1e-51
log p-value:-1.177e+02
Information Content per bp:1.557
Number of Target Sequences with motif100.0
Percentage of Target Sequences with motif12.42%
Number of Background Sequences with motif817.9
Percentage of Background Sequences with motif1.76%
Average Position of motif in Targets51.4 +/- 23.1bp
Average Position of motif in Background50.3 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.94
Offset:3
Orientation:forward strand
Alignment:HNVWGGGGNTTTCCYV
---NGGGGATTTCCC-
 G T C A C T A G T C G A G C T A C T A G A C T G A C T G C T A G T C A G C G A T A C G T A G C T A G T C G T A C G A T C T A G C
A C G T A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.93
Offset:4
Orientation:forward strand
Alignment:HNVWGGGGNTTTCCYV
----GGGGATTTCC--
 G T C A C T A G T C G A G C T A C T A G A C T G A C T G C T A G T C A G C G A T A C G T A G C T A G T C G T A C G A T C T A G C
A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.92
Offset:4
Orientation:forward strand
Alignment:HNVWGGGGNTTTCCYV
----GGGGATTTCC--
 G T C A C T A G T C G A G C T A C T A G A C T G A C T G C T A G T C A G C G A T A C G T A G C T A G T C G T A C G A T C T A G C
A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.91
Offset:4
Orientation:forward strand
Alignment:HNVWGGGGNTTTCCYV
----GGGAATTTCC--
 G T C A C T A G T C G A G C T A C T A G A C T G A C T G C T A G T C A G C G A T A C G T A G C T A G T C G T A C G A T C T A G C
A C G T A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.87
Offset:4
Orientation:reverse strand
Alignment:HNVWGGGGNTTTCCYV
----GGGAATTTCC--
 G T C A C T A G T C G A G C T A C T A G A C T G A C T G C T A G T C A G C G A T A C G T A G C T A G T C G T A C G A T C T A G C
A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.78
Offset:4
Orientation:reverse strand
Alignment:HNVWGGGGNTTTCCYV
----GGGGATTCCCCC
 G T C A C T A G T C G A G C T A C T A G A C T G A C T G C T A G T C A G C G A T A C G T A G C T A G T C G T A C G A T C T A G C
A C G T A C G T A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:HNVWGGGGNTTTCCYV
---AGGGGAATCCCCT
 G T C A C T A G T C G A G C T A C T A G A C T G A C T G C T A G T C A G C G A T A C G T A G C T A G T C G T A C G A T C T A G C
A C G T A C G T A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:HNVWGGGGNTTTCCYV
---AGGGGATTCCCCT
 G T C A C T A G T C G A G C T A C T A G A C T G A C T G C T A G T C A G C G A T A C G T A G C T A G T C G T A C G A T C T A G C
A C G T A C G T A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:9
Score:0.64
Offset:7
Orientation:forward strand
Alignment:HNVWGGGGNTTTCCYV-
-------ATTTTCCATT
 G T C A C T A G T C G A G C T A C T A G A C T G A C T G C T A G T C A G C G A T A C G T A G C T A G T C G T A C G A T C T A G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

NFATC3/MA0625.1/Jaspar

Match Rank:10
Score:0.64
Offset:7
Orientation:forward strand
Alignment:HNVWGGGGNTTTCCYV-
-------ATTTTCCATT
 G T C A C T A G T C G A G C T A C T A G A C T G A C T G C T A G T C A G C G A T A C G T A G C T A G T C G T A C G A T C T A G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T