Information for 3-GCGGGGCTTTCCC (Motif 4)

T A C G G A T C A C T G A T C G T A C G C A T G T G A C A C G T A C G T A G C T A G T C G A T C A G T C
Reverse Opposite:
T C A G C T A G A C T G T C G A T G C A T C G A A C T G G T A C A G T C A T G C G T A C C T A G A T G C
p-value:1e-23
log p-value:-5.351e+01
Information Content per bp:1.700
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.46%
Number of Background Sequences with motif370.2
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets53.8 +/- 27.6bp
Average Position of motif in Background50.3 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.86
Offset:1
Orientation:forward strand
Alignment:GCGGGGCTTTCCC
-NGGGGATTTCCC
 T A C G G A T C A C T G A T C G T A C G C A T G T G A C A C G T A C G T A G C T A G T C G A T C A G T C
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.85
Offset:2
Orientation:forward strand
Alignment:GCGGGGCTTTCCC
--GGGGATTTCC-
 T A C G G A T C A C T G A T C G T A C G C A T G T G A C A C G T A C G T A G C T A G T C G A T C A G T C
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:3
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:GCGGGGCTTTCCC-
--GGGGATTCCCCC
 T A C G G A T C A C T G A T C G T A C G C A T G T G A C A C G T A C G T A G C T A G T C G A T C A G T C A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:4
Score:0.83
Offset:1
Orientation:forward strand
Alignment:GCGGGGCTTTCCC-
-AGGGGATTCCCCT
 T A C G G A T C A C T G A T C G T A C G C A T G T G A C A C G T A C G T A G C T A G T C G A T C A G T C A C G T
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.82
Offset:2
Orientation:forward strand
Alignment:GCGGGGCTTTCCC
--GGGGATTTCC-
 T A C G G A T C A C T G A T C G T A C G C A T G T G A C A C G T A C G T A G C T A G T C G A T C A G T C
A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GCGGGGCTTTCCC
--GGGAATTTCC-
 T A C G G A T C A C T G A T C G T A C G C A T G T G A C A C G T A C G T A G C T A G T C G A T C A G T C
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GCGGGGCTTTCCC-
-AGGGGATTCCCCT
 T A C G G A T C A C T G A T C G T A C G C A T G T G A C A C G T A C G T A G C T A G T C G A T C A G T C A C G T
A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GCGGGGCTTTCCC
--GGGAATTTCC-
 T A C G G A T C A C T G A T C G T A C G C A T G T G A C A C G T A C G T A G C T A G T C G A T C A G T C
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.59
Offset:6
Orientation:forward strand
Alignment:GCGGGGCTTTCCC---
------HTTTCCCASG
 T A C G G A T C A C T G A T C G T A C G C A T G T G A C A C G T A C G T A G C T A G T C G A T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.58
Offset:8
Orientation:reverse strand
Alignment:GCGGGGCTTTCCC-
--------TCCCCA
 T A C G G A T C A C T G A T C G T A C G C A T G T G A C A C G T A C G T A G C T A G T C G A T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A