Information for 22-GAAGTAACACAGG (Motif 24)

A C T G C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C T G A C G T A C T G A C G T A C G T C G T A A G T C A C G T A C G T A G T C
p-value:1e-7
log p-value:-1.655e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.0 +/- 22.3bp
Average Position of motif in Background32.5 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAAGTAACACAGG-
AAAAATAACAAACGG
 A C G T A C T G C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C T G A C T G A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAAGTAACACAGG-
TGACANARRCCAGRC
 A C G T A C T G C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C T G A C T G A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GAAGTAACACAGG
-----AACAAAGG
 A C T G C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAAGTAACACAGG
CGGAAGTGAAAC---
 A C G T A C G T A C T G C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C T G A C T G
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:GAAGTAACACAGG
-------CACAGN
 A C T G C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAAGTAACACAGG-------
GAAGTANCACGAATNMRAGT
 A C T G C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GAAGTAACACAGG
---GGAACAAAGR
 A C T G C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C T G A C T G
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GAAGTAACACAGG
---AAAACAAAGG
 A C T G C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C T G A C T G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0012.1_Elf3_1/Jaspar

Match Rank:9
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GAAGTAACACAGG
AACAAGGAAGTAA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C T G A C T G
C G A T C G T A G T A C T G C A T G C A C T A G C A T G C G T A G C T A T C A G G A C T C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAAGTAACACAGG----
ATAAGAACAAAGGACTA
 A C T G C G T A C G T A A C T G A C G T C G T A C G T A A G T C C G T A A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A