Information for 19-GTTGCTGTGCACA (Motif 19)

A C T G A G C T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C T A G A G T C T C G A A G T C C G T A A C T G G T A C C G T A C T G A G T A C
p-value:1e-10
log p-value:-2.495e+01
Information Content per bp:1.866
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 27.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0026.1_Gm397_1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GTTGCTGTGCACA----
NNGTATGTGCACATNNN
 A C T G A G C T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GTTGCTGTGCACA----
NTNTATGTGCACATNNN
 A C T G A G C T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GTTGCTGTGCACA
---GCTGTG----
 A C T G A G C T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C C G T A A G T C C G T A
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTGTGCACA
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A C T G A G C T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C C G T A A G T C C G T A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTTGCTGTGCACA
-WDNCTGGGCA--
 A C T G A G C T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C C G T A A G T C C G T A
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTGTGCACA
NCCGTTGCTANGNGN-
 A C G T A C G T A C G T A C T G A G C T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C C G T A A G T C C G T A
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTGTGCACA
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A C T G A G C T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C C G T A A G T C C G T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCTGTGCACA
CTGTTGCTAGGS---
 A C G T A C G T A C T G A G C T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C C G T A A G T C C G T A
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTGTGCACA
CCCCCTGCTGTG----
 A C G T A C G T A C G T A C T G A G C T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C C G T A A G T C C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Foxo1/MA0480.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GTTGCTGTGCACA
--TCCTGTTTACA
 A C T G A G C T A C G T A C T G A G T C A C G T A C T G A C G T A C T G A G T C C G T A A G T C C G T A
A C G T A C G T C A G T A T G C A G T C A C G T A C T G A C G T A C G T A C G T G C T A A G T C G C T A