Information for 20-TAACCTAGGT (Motif 25)

C A G T G T C A C T G A A G T C A G T C A C G T C G T A A C T G A C T G A C G T
Reverse Opposite:
C G T A G T A C A G T C A C G T C G T A C T A G A C T G A G C T C A G T G T C A
p-value:1e-7
log p-value:-1.835e+01
Information Content per bp:1.866
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif33.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets59.2 +/- 24.0bp
Average Position of motif in Background47.1 +/- 37.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TAACCTAGGT
TGACCTARTT
 C A G T G T C A C T G A A G T C A G T C A C G T C G T A A C T G A C T G A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TAACCTAGGT---
TTGACCTANTTATN
 A C G T C A G T G T C A C T G A A G T C A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PB0161.1_Rxra_2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TAACCTAGGT------
TCGCGAAGGTTGTACT
 C A G T G T C A C T G A A G T C A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TAACCTAGGT
TGACCTTGAT
 C A G T G T C A C T G A A G T C A G T C A C G T C G T A A C T G A C T G A C G T
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

T/MA0009.2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TAACCTAGGT----
TCACACCTAGGTGTGA
 A C G T A C G T C A G T G T C A C T G A A G T C A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
G A C T T G A C C T G A A G T C T C G A G A T C T G A C G A C T C G T A A C T G C T A G A G C T C T A G G A C T A C T G C T G A

PB0159.1_Rfx4_2/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TAACCTAGGT-----
TACCCTAGTTACCGA
 C A G T G T C A C T G A A G T C A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TAACCTAGGT
NTGACCTTGA-
 A C G T C A G T G T C A C T G A A G T C A G T C A C G T C G T A A C T G A C T G A C G T
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TAACCTAGGT------
GAAAACTAGTTAACATC
 A C G T C A G T G T C A C T G A A G T C A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TAACCTAGGT-------
TATTCAAGGTCATGCGA
 C A G T G T C A C T G A A G T C A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

NEUROG2/MA0669.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TAACCTAGGT-
-AACATATGTC
 C A G T G T C A C T G A A G T C A G T C A C G T C G T A A C T G A C T G A C G T A C G T
A C G T T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C