Information for 10-GCAGCCAAGAAGCCAC (Motif 12)

A C T G T A G C C G T A C T A G A G T C A G T C C G T A C G T A C T A G C G T A C G T A A C T G A G T C A G T C C G T A A G T C
Reverse Opposite:
C T A G C G A T A C T G A C T G A G T C A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G G T A C
p-value:1e-10
log p-value:-2.469e+01
Information Content per bp:1.877
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.2 +/- 25.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCAGCCAAGAAGCCAC
--TGCCAA--------
 A C T G T A G C C G T A C T A G A G T C A G T C C G T A C G T A C T A G C G T A C G T A A C T G A G T C A G T C C G T A A G T C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCAGCCAAGAAGCCAC
--AGCCAATCGG----
 A C T G T A G C C G T A C T A G A G T C A G T C C G T A C G T A C T A G C G T A C G T A A C T G A G T C A G T C C G T A A G T C
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCAGCCAAGAAGCCAC
AAATGGACCAATCAG----
 A C G T A C G T A C G T A C T G T A G C C G T A C T A G A G T C A G T C C G T A C G T A C T A G C G T A C G T A A C T G A G T C A G T C C G T A A G T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCAGCCAAGAAGCCAC
ACTAGCCAATCA-----
 A C G T A C T G T A G C C G T A C T A G A G T C A G T C C G T A C G T A C T A G C G T A C G T A A C T G A G T C A G T C C G T A A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCAGCCAAGAAGCCAC
CGTGCCAAG-------
 A C T G T A G C C G T A C T A G A G T C A G T C C G T A C G T A C T A G C G T A C G T A A C T G A G T C A G T C C G T A A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:GCAGCCAAGAAGCCAC
-------NGAAGC---
 A C T G T A G C C G T A C T A G A G T C A G T C C G T A C G T A C T A G C G T A C G T A A C T G A G T C A G T C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T

PROX1/MA0794.1/Jaspar

Match Rank:7
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GCAGCCAAGAAGCCAC-
-----CAAGACGCCTTA
 A C T G T A G C C G T A C T A G A G T C A G T C C G T A C G T A C T A G C G T A C G T A A C T G A G T C A G T C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCAGCCAAGAAGCCAC
BCAGACWA--------
 A C T G T A G C C G T A C T A G A G T C A G T C C G T A C G T A C T A G C G T A C G T A A C T G A G T C A G T C C G T A A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GCAGCCAAGAAGCCAC
GGTGCCAAGT------
 A C T G T A G C C G T A C T A G A G T C A G T C C G T A C G T A C T A G C G T A C G T A A C T G A G T C A G T C C G T A A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:10
Score:0.50
Offset:7
Orientation:forward strand
Alignment:GCAGCCAAGAAGCCAC
-------AAAAGTCAA
 A C T G T A G C C G T A C T A G A G T C A G T C C G T A C G T A C T A G C G T A C G T A A C T G A G T C A G T C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A