Information for 4-NGGGAGCTGTCCA (Motif 2)

A T G C C T A G C T A G A C T G G T C A C T A G A G T C A G C T T A C G A G C T A G T C A G T C T C G A
Reverse Opposite:
A G C T A C T G C T A G C T G A A T G C C T G A A C T G G A T C C A G T T A G C G A T C G A T C T A C G
p-value:1e-381
log p-value:-8.787e+02
Information Content per bp:1.780
Number of Target Sequences with motif242.0
Percentage of Target Sequences with motif27.63%
Number of Background Sequences with motif152.8
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets52.9 +/- 13.7bp
Average Position of motif in Background54.0 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:NGGGAGCTGTCCA---------
--GGAGCTGTCCATGGTGCTGA
 A T G C C T A G C T A G A C T G G T C A C T A G A G T C A G C T T A C G A G C T A G T C A G T C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

PH0169.1_Tgif1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:NGGGAGCTGTCCA----
NNNCAGCTGTCAATATN
 A T G C C T A G C T A G A C T G G T C A C T A G A G T C A G C T T A C G A G C T A G T C A G T C T C G A A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

PH0102.1_Meis1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:NGGGAGCTGTCCA---
AACGAGCTGTCAATAC
 A T G C C T A G C T A G A C T G G T C A C T A G A G T C A G C T T A C G A G C T A G T C A G T C T C G A A C G T A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

PH0140.1_Pknox1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:NGGGAGCTGTCCA---
AAAGACCTGTCAATCC
 A T G C C T A G C T A G A C T G G T C A C T A G A G T C A G C T T A C G A G C T A G T C A G T C T C G A A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

REST/MA0138.2/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:NGGGAGCTGTCCA----------
--GGCGCTGTCCATGGTGCTGAA
 A T G C C T A G C T A G A C T G G T C A C T A G A G T C A G C T T A C G A G C T A G T C A G T C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:NGGGAGCTGTCCA---
AACTAGCTGTCAATAC
 A T G C C T A G C T A G A C T G G T C A C T A G A G T C A G C T T A C G A G C T A G T C A G T C T C G A A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PH0104.1_Meis2/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:NGGGAGCTGTCCA---
AAAGACCTGTCAATAC
 A T G C C T A G C T A G A C T G G T C A C T A G A G T C A G C T T A C G A G C T A G T C A G T C T C G A A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:NGGGAGCTGTCCA---
AAGCACCTGTCAATAT
 A T G C C T A G C T A G A C T G G T C A C T A G A G T C A G C T T A C G A G C T A G T C A G T C T C G A A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:NGGGAGCTGTCCA
-----GCTGTCAA
 A T G C C T A G C T A G A C T G G T C A C T A G A G T C A G C T T A C G A G C T A G T C A G T C T C G A
A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:NGGGAGCTGTCCA---
AATTACCTGTCAATAC
 A T G C C T A G C T A G A C T G G T C A C T A G A G T C A G C T T A C G A G C T A G T C A G T C T C G A A C G T A C G T A C G T
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C