Information for 13-RAGCTSWTRAGAG (Motif 11)

T C A G C G T A A C T G A G T C A C G T A T G C C G A T C G A T C T A G C T G A A C T G C G T A A C T G
Reverse Opposite:
A G T C C G A T A G T C A G C T A G T C C G T A C G T A A T C G C G T A A C T G A G T C A C G T A G T C
p-value:1e-10
log p-value:-2.404e+01
Information Content per bp:1.870
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.1 +/- 32.6bp
Average Position of motif in Background41.5 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0022.1_Gata5_1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RAGCTSWTRAGAG---
TAAACTGATAAGAAGAT
 A C G T T C A G C G T A A C T G A G T C A C G T A T G C C G A T C G A T C T A G C T G A A C T G C G T A A C T G A C G T A C G T A C G T
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:RAGCTSWTRAGAG---
-----CTTGAGTGGCT
 T C A G C G T A A C T G A G T C A C G T A T G C C G A T C G A T C T A G C T G A A C T G C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:RAGCTSWTRAGAG---
------TTGAGTGSTT
 T C A G C G T A A C T G A G T C A C G T A T G C C G A T C G A T C T A G C T G A A C T G C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RAGCTSWTRAGAG-
--GGTGYTGACAGS
 T C A G C G T A A C T G A G T C A C G T A T G C C G A T C G A T C T A G C T G A A C T G C G T A A C T G A C G T
A C G T A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:RAGCTSWTRAGAG--
-----CTYRAGTGSY
 T C A G C G T A A C T G A G T C A C G T A T G C C G A T C G A T C T A G C T G A A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:RAGCTSWTRAGAG--
-----BTBRAGTGSN
 T C A G C G T A A C T G A G T C A C G T A T G C C G A T C G A T C T A G C T G A A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

TFAP4/MA0691.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--RAGCTSWTRAGAG
ATCAGCTGTT-----
 A C G T A C G T T C A G C G T A A C T G A G T C A C G T A T G C C G A T C G A T C T A G C T G A A C T G C G T A A C T G
T C G A G C A T A T G C C G T A A T C G T A G C A C G T A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RAGCTSWTRAGAG---
-AGATGKDGAGATAAG
 T C A G C G T A A C T G A G T C A C G T A T G C C G A T C G A T C T A G C T G A A C T G C G T A A C T G A C G T A C G T A C G T
A C G T C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:RAGCTSWTRAGAG
-NGCTN-------
 T C A G C G T A A C T G A G T C A C G T A T G C C G A T C G A T C T A G C T G A A C T G C G T A A C T G
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RAGCTSWTRAGAG
CAGCTGTT-----
 T C A G C G T A A C T G A G T C A C G T A T G C C G A T C G A T C T A G C T G A A C T G C G T A A C T G
A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T