Information for 1-CTGTCCATGGTGCTGA (Motif 1)

G A T C C G A T T A C G A C G T A G T C G T A C C T G A C G A T C T A G A C T G A C G T A C T G G T A C A G C T T C A G T G C A
Reverse Opposite:
A C G T A G T C C T G A C A T G T G A C C G T A A G T C A G T C G C T A G A C T A C T G C T A G G T C A A T G C C G T A C T A G
p-value:1e-1450
log p-value:-3.341e+03
Information Content per bp:1.688
Number of Target Sequences with motif454.0
Percentage of Target Sequences with motif51.83%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.8 +/- 11.2bp
Average Position of motif in Background39.8 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.93
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCCATGGTGCTGA-
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T G A T C C G A T T A C G A C G T A G T C G T A C C T G A C G A T C T A G A C T G A C G T A C T G G T A C A G C T T C A G T G C A A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.92
Offset:-4
Orientation:forward strand
Alignment:----CTGTCCATGGTGCTGA
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T G A T C C G A T T A C G A C G T A G T C G T A C C T G A C G A T C T A G A C T G A C G T A C T G G T A C A G C T T C A G T G C A
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTGTCCATGGTGCTGA
CTGTTCCTGG------
 G A T C C G A T T A C G A C G T A G T C G T A C C T G A C G A T C T A G A C T G A C G T A C T G G T A C A G C T T C A G T G C A
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGTCCATGGTGCTGA
CTGACCTTTG------
 G A T C C G A T T A C G A C G T A G T C G T A C C T G A C G A T C T A G A C T G A C G T A C T G G T A C A G C T T C A G T G C A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCATGGTGCTGA
BNTGDCCTTG-------
 A C G T G A T C C G A T T A C G A C G T A G T C G T A C C T G A C G A T C T A G A C T G A C G T A C T G G T A C A G C T T C A G T G C A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CTGTCCATGGTGCTGA
----CCTTTGTT----
 G A T C C G A T T A C G A C G T A G T C G T A C C T G A C G A T C T A G A C T G A C G T A C T G G T A C A G C T T C A G T G C A
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGTCCATGGTGCTGA-
NNNTCCTTTGTTCTNNN
 G A T C C G A T T A C G A C G T A G T C G T A C C T G A C G A T C T A G A C T G A C G T A C T G G T A C A G C T T C A G T G C A A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTGTCCATGGTGCTGA
---NCCATTGTTC---
 G A T C C G A T T A C G A C G T A G T C G T A C C T G A C G A T C T A G A C T G A C G T A C T G G T A C A G C T T C A G T G C A
A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CTGTCCATGGTGCTGA
----CCATTGTTTT--
 G A T C C G A T T A C G A C G T A G T C G T A C C T G A C G A T C T A G A C T G A C G T A C T G G T A C A G C T T C A G T G C A
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCATGGTGCTGA
GCTGTCAA---------
 A C G T G A T C C G A T T A C G A C G T A G T C G T A C C T G A C G A T C T A G A C T G A C G T A C T G G T A C A G C T T C A G T G C A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T