Information for 6-CTGTCCAGCA (Motif 3)

G T A C G A C T A T C G A C G T A G T C A G T C C G T A A C T G A T G C C G T A
Reverse Opposite:
A C G T A T C G A G T C A C G T C T A G A C T G C G T A A T G C C T G A A C T G
p-value:1e-42
log p-value:-9.696e+01
Information Content per bp:1.869
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.27%
Number of Background Sequences with motif57.6
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets55.3 +/- 27.2bp
Average Position of motif in Background44.3 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bcl6/MA0463.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CTGTCCAGCA--
NGCTTTCTAGGAAN
 A C G T A C G T G T A C G A C T A T C G A C G T A G T C A G T C C G T A A C T G A T G C C G T A A C G T A C G T
C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTGTCCAGCA---
CTGTCTGTCACCT
 G T A C G A C T A T C G A C G T A G T C A G T C C G T A A C T G A T G C C G T A A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTGTCCAGCA-
NCTGTCAATCAN
 A C G T G T A C G A C T A T C G A C G T A G T C A G T C C G T A A C T G A T G C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTGTCCAGCA---
-TGTCTGDCACCT
 G T A C G A C T A T C G A C G T A G T C A G T C C G T A A C T G A T G C C G T A A C G T A C G T A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTGTCCAGCA
GSCTGTCACTCA
 A C G T A C G T G T A C G A C T A T C G A C G T A G T C A G T C C G T A A C T G A T G C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTGTCCAGCA-
SCTGTCAVTCAV
 A C G T G T A C G A C T A T C G A C G T A G T C A G T C C G T A A C T G A T G C C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTGTCCAGCA--
NNNCTTTCCAGGAAA
 A C G T A C G T A C G T G T A C G A C T A T C G A C G T A G T C A G T C C G T A A C T G A T G C C G T A A C G T A C G T
G A C T C G A T T C A G G A T C G A C T A G C T A G C T A G T C G A T C C G T A C T A G C T A G T C G A T C G A C T G A

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCAGCA
GCTGTCAA---
 A C G T G T A C G A C T A T C G A C G T A G T C A G T C C G T A A C T G A T G C C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

PB0006.1_Bcl6b_1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGTCCAGCA-----
TCTTTCGAGGAATTTG
 A C G T G T A C G A C T A T C G A C G T A G T C A G T C C G T A A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T
C G A T G A T C G A C T C G A T C G A T A G T C A C T G C G T A T C A G C A T G C G T A G C T A G A C T G C A T G A C T T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGTCCAGCA
CTGTCTGG--
 G T A C G A C T A T C G A C G T A G T C A G T C C G T A A C T G A T G C C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T