Information for 12-CTCMYCTGCTGRG (Motif 12)

A G T C G C A T A T G C G T A C A G T C A G T C G C A T A C T G A G T C C G A T A C T G C T A G C T A G
Reverse Opposite:
A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G C T A G C A T G A T C G C G T A A C T G
p-value:1e-10
log p-value:-2.387e+01
Information Content per bp:1.783
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.37%
Number of Background Sequences with motif164.9
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets59.4 +/- 27.7bp
Average Position of motif in Background46.1 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CTCMYCTGCTGRG
-CCCCCTGCTGTG
 A G T C G C A T A T G C G T A C A G T C A G T C G C A T A C T G A G T C C G A T A C T G C T A G C T A G
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CTCMYCTGCTGRG-
GGCCYCCTGCTGDGH
 A C G T A G T C G C A T A T G C G T A C A G T C A G T C G C A T A C T G A G T C C G A T A C T G C T A G C T A G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CTCMYCTGCTGRG---
-TCNCCTGCTGNGNNN
 A G T C G C A T A T G C G T A C A G T C A G T C G C A T A C T G A G T C C G A T A C T G C T A G C T A G A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CTCMYCTGCTGRG---
-TNTCCTGCTGTGNNG
 A G T C G C A T A T G C G T A C A G T C A G T C G C A T A C T G A G T C C G A T A C T G C T A G C T A G A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CTCMYCTGCTGRG-
----CCTGCTGAGH
 A G T C G C A T A T G C G T A C A G T C A G T C G C A T A C T G A G T C C G A T A C T G C T A G C T A G A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTCMYCTGCTGRG---
-NNTCCTGCTGTGNNN
 A G T C G C A T A T G C G T A C A G T C A G T C G C A T A C T G A G T C C G A T A C T G C T A G C T A G A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCMYCTGCTGRG
CCTCACCTG-----
 A C G T A G T C G C A T A T G C G T A C A G T C A G T C G C A T A C T G A G T C C G A T A C T G C T A G C T A G
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTCMYCTGCTGRG-
GACCCCCCGCTGCGC
 A C G T A G T C G C A T A T G C G T A C A G T C A G T C G C A T A C T G A G T C C G A T A C T G C T A G C T A G A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTCMYCTGCTGRG-
GACCCCCCGCTGTGC
 A C G T A G T C G C A T A T G C G T A C A G T C A G T C G C A T A C T G A G T C C G A T A C T G C T A G C T A G A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTCMYCTGCTGRG
GACCCCCCGCTGTG
 A C G T A G T C G C A T A T G C G T A C A G T C A G T C G C A T A C T G A G T C C G A T A C T G C T A G C T A G
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G