Information for 11-CTACAGGGCA (Motif 13)

A G T C A C G T C G T A A T G C C G T A A C T G C T A G A C T G A T G C C G T A
Reverse Opposite:
A C G T A T C G G T A C A G T C G T A C A C G T A T C G A C G T G T C A A C T G
p-value:1e-13
log p-value:-3.120e+01
Information Content per bp:1.844
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets49.8 +/- 30.3bp
Average Position of motif in Background80.7 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTACAGGGCA
--TRAGGTCA
 A G T C A C G T C G T A A T G C C G T A A C T G C T A G A C T G A T G C C G T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTACAGGGCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A G T C A C G T C G T A A T G C C G T A A C T G C T A G A C T G A T G C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTACAGGGCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A G T C A C G T C G T A A T G C C G T A A C T G C T A G A C T G A T G C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTACAGGGCA-
--NGTGGGCAT
 A G T C A C G T C G T A A T G C C G T A A C T G C T A G A C T G A T G C C G T A A C G T
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTACAGGGCA-
GCCTCAGGGCAT
 A C G T A G T C A C G T C G T A A T G C C G T A A C T G C T A G A C T G A T G C C G T A A C G T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTACAGGGCA-
-CAAAGGTCAG
 A G T C A C G T C G T A A T G C C G T A A C T G C T A G A C T G A T G C C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CTACAGGGCA
GGGTTACTANAGGTCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A T G C C G T A A C T G C T A G A C T G A T G C C G T A
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTACAGGGCA
ANGNAAAGGTCA
 A C G T A C G T A G T C A C G T C G T A A T G C C G T A A C T G C T A G A C T G A T G C C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTACAGGGCA
--AGRGGTCA
 A G T C A C G T C G T A A T G C C G T A A C T G C T A G A C T G A T G C C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:10
Score:0.57
Offset:-9
Orientation:reverse strand
Alignment:---------CTACAGGGCA
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A T G C C G T A A C T G C T A G A C T G A T G C C G T A
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A