Information for 9-AGTGCTGGACAGH (Motif 4)

C G T A C T A G A C G T A C T G A G T C A C G T C T A G A C T G C G T A A G T C C G T A A C T G G A C T
Reverse Opposite:
C G T A A G T C C G A T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A A G T C A C G T
p-value:1e-26
log p-value:-6.049e+01
Information Content per bp:1.872
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.5 +/- 23.2bp
Average Position of motif in Background79.3 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGTGCTGGACAGH
AGGTGNCAGACAG-
A C G T C G T A C T A G A C G T A C T G A G T C A C G T C T A G A C T G C G T A A G T C C G T A A C T G G A C T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGTGCTGGACAGH
AGGTGHCAGACA--
A C G T C G T A C T A G A C G T A C T G A G T C A C G T C T A G A C T G C G T A A G T C C G T A A C T G G A C T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGTGCTGGACAGH
-NTGATTGACAGN
C G T A C T A G A C G T A C T G A G T C A C G T C T A G A C T G C G T A A G T C C G T A A C T G G A C T
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGTGCTGGACAGH-
--TGAGTGACAGSC
C G T A C T A G A C G T A C T G A G T C A C G T C T A G A C T G C G T A A G T C C G T A A C T G G A C T A C G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGTGCTGGACAGH
-BTGABTGACAGS
C G T A C T A G A C G T A C T G A G T C A C G T C T A G A C T G C G T A A G T C C G T A A C T G G A C T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGTGCTGGACAGH
-----TTGACAGC
C G T A C T A G A C G T A C T G A G T C A C G T C T A G A C T G C G T A A G T C C G T A A C T G G A C T
A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

PB0006.1_Bcl6b_1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGTGCTGGACAGH
NNNATTCCTCGAAAGN
A C G T A C G T A C G T C G T A C T A G A C G T A C T G A G T C A C G T C T A G A C T G C G T A A G T C C G T A A C T G G A C T
A T G C C T G A C G T A C G T A C G A T G C A T G T A C A G T C G C A T T G A C C T A G G C T A C G T A C T G A C T A G G C T A

Bcl6/MA0463.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGTGCTGGACAGH-
TTTCCTAGAAAGCA
C G T A C T A G A C G T A C T G A G T C A C G T C T A G A C T G C G T A A G T C C G T A A C T G G A C T A C G T
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGTGCTGGACAGH
-----TTGACAGG
C G T A C T A G A C G T A C T G A G T C A C G T C T A G A C T G C G T A A G T C C G T A A C T G G A C T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:AGTGCTGGACAGH
----CCAGACAG-
C G T A C T A G A C G T A C T G A G T C A C G T C T A G A C T G C G T A A G T C C G T A A C T G G A C T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T