Information for 3-GTGGACAGCTCCC (Motif 2)

C A T G G A C T T C A G T C A G G C T A A T G C C T G A C A T G G A T C A C G T A T G C A G T C G A T C
Reverse Opposite:
C T A G T C A G A T C G T G C A C T A G G T A C A G C T T A C G C A G T A G T C A G T C C T G A G T A C
p-value:1e-235
log p-value:-5.417e+02
Information Content per bp:1.655
Number of Target Sequences with motif180.0
Percentage of Target Sequences with motif21.74%
Number of Background Sequences with motif221.0
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets52.5 +/- 20.6bp
Average Position of motif in Background45.4 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0102.1_Meis1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GTGGACAGCTCCC-
NTATTGACAGCTNNTT
 A C G T A C G T C A T G G A C T T C A G T C A G G C T A A T G C C T G A C A T G G A T C A C G T A T G C A G T C G A T C A C G T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

PH0140.1_Pknox1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GTGGACAGCTCCC-
GGATTGACAGGTCNTT
 A C G T A C G T C A T G G A C T T C A G T C A G G C T A A T G C C T G A C A T G G A T C A C G T A T G C A G T C G A T C A C G T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

PH0170.1_Tgif2/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTGGACAGCTCCC-
GTATTGACAGCTNNTT
 A C G T A C G T C A T G G A C T T C A G T C A G G C T A A T G C C T G A C A T G G A T C A C G T A T G C A G T C G A T C A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:4
Score:0.68
Offset:-8
Orientation:reverse strand
Alignment:--------GTGGACAGCTCCC
TCAGCACCATGGACAGCTCC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G A C T T C A G T C A G G C T A A T G C C T G A C A T G G A T C A C G T A T G C A G T C G A T C
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTGGACAGCTCCC-
GATATTGACAGCTGCGT
 A C G T A C G T A C G T C A T G G A C T T C A G T C A G G C T A A T G C C T G A C A T G G A T C A C G T A T G C A G T C G A T C A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

PH0104.1_Meis2/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTGGACAGCTCCC-
NTATTGACAGGTNNTN
 A C G T A C G T C A T G G A C T T C A G T C A G G C T A A T G C C T G A C A T G G A T C A C G T A T G C A G T C G A T C A C G T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTGGACAGCTCCC-
NNATTGACAGGTGCTT
 A C G T A C G T C A T G G A C T T C A G T C A G G C T A A T G C C T G A C A T G G A T C A C G T A T G C A G T C G A T C A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

REST/MA0138.2/Jaspar

Match Rank:8
Score:0.67
Offset:-9
Orientation:forward strand
Alignment:---------GTGGACAGCTCCC
TTCAGCACCATGGACAGCGCC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G A C T T C A G T C A G G C T A A T G C C T G A C A T G G A T C A C G T A T G C A G T C G A T C
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GTGGACAGCTCCC
-TTGACAGC----
 C A T G G A C T T C A G T C A G G C T A A T G C C T G A C A T G G A T C A C G T A T G C A G T C G A T C
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GTGGACAGCTCCC-
GTATTGACAGGTNNTT
 A C G T A C G T C A T G G A C T T C A G T C A G G C T A A T G C C T G A C A T G G A T C A C G T A T G C A G T C G A T C A C G T
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T