Information for 11-AGATTCTGCCTGG (Motif 6)

C G T A A C T G G T C A A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C T G A T C G A G T C C G T A A C T G G T C A C G T A A C G T A G T C C G A T
p-value:1e-10
log p-value:-2.511e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.0 +/- 31.8bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGATTCTGCCTGG-----
-NNTNNTGTCTGGNNTNG
 C G T A A C T G G T C A A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:5
Orientation:forward strand
Alignment:AGATTCTGCCTGG
-----CTGTCTGG
 C G T A A C T G G T C A A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGATTCTGCCTGG
AGATGCTRCTRCCHT-
 A C G T A C G T A C G T C G T A A C T G G T C A A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A C T G A C T G
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGATTCTGCCTGG
CAGCTGTTTCCT--
 A C G T C G T A A C T G G T C A A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A C T G A C T G
G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGATTCTGCCTGG
-----TWGTCTGV
 C G T A A C T G G T C A A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AGATTCTGCCTGG
---VBSYGTCTGG
 C G T A A C T G G T C A A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A C T G A C T G
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:AGATTCTGCCTGG---
------WDNCTGGGCA
 C G T A A C T G G T C A A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AGATTCTGCCTGG---
------GGTCTGGCAT
 C G T A A C T G G T C A A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AGATTCTGCCTGG----
AGAGTGCTGATTGGTCCA
 A C G T C G T A A C T G G T C A A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A C T G A C T G A C G T A C G T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AGATTCTGCCTGG--
-----CTTCCNGGAA
 C G T A A C T G G T C A A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A