Information for 2-STGGACAGCTCCT (Motif 2)

A T C G C G A T A C T G C T A G C G T A T A G C C G T A A C T G A G T C C G A T T A G C A G T C G A C T
Reverse Opposite:
C T G A C T A G A T C G G C T A T C A G G T A C A C G T A T C G C G A T A G T C A G T C G C T A T A G C
p-value:1e-222
log p-value:-5.122e+02
Information Content per bp:1.679
Number of Target Sequences with motif229.0
Percentage of Target Sequences with motif27.59%
Number of Background Sequences with motif638.6
Percentage of Background Sequences with motif1.33%
Average Position of motif in Targets49.6 +/- 21.4bp
Average Position of motif in Background48.6 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0102.1_Meis1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--STGGACAGCTCCT-
NTATTGACAGCTNNTT
 A C G T A C G T A T C G C G A T A C T G C T A G C G T A T A G C C G T A A C T G A G T C C G A T T A G C A G T C G A C T A C G T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

PH0170.1_Tgif2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--STGGACAGCTCCT-
GTATTGACAGCTNNTT
 A C G T A C G T A T C G C G A T A C T G C T A G C G T A T A G C C G T A A C T G A G T C C G A T T A G C A G T C G A C T A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:STGGACAGCTCCT
---CACAGN----
 A T C G C G A T A C T G C T A G C G T A T A G C C G T A A C T G A G T C C G A T T A G C A G T C G A C T
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:4
Score:0.67
Offset:-8
Orientation:reverse strand
Alignment:--------STGGACAGCTCCT
TCAGCACCATGGACAGCTCC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G A T A C T G C T A G C G T A T A G C C G T A A C T G A G T C C G A T T A G C A G T C G A C T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C A C G T

PH0104.1_Meis2/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--STGGACAGCTCCT-
NTATTGACAGGTNNTN
 A C G T A C G T A T C G C G A T A C T G C T A G C G T A T A G C C G T A A C T G A G T C C G A T T A G C A G T C G A C T A C G T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--STGGACAGCTCCT-
NNATTGACAGGTGCTT
 A C G T A C G T A T C G C G A T A C T G C T A G C G T A T A G C C G T A A C T G A G T C C G A T T A G C A G T C G A C T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:STGGACAGCTCCT
-TTGACAGC----
 A T C G C G A T A C T G C T A G C G T A T A G C C G T A A C T G A G T C C G A T T A G C A G T C G A C T
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:8
Score:0.66
Offset:-9
Orientation:forward strand
Alignment:---------STGGACAGCTCCT
TTCAGCACCATGGACAGCGCC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G A T A C T G C T A G C G T A T A G C C G T A A C T G A G T C C G A T T A G C A G T C G A C T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--STGGACAGCTCCT-
GGATTGACAGGTCNTT
 A C G T A C G T A T C G C G A T A C T G C T A G C G T A T A G C C G T A A C T G A G T C C G A T T A G C A G T C G A C T A C G T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--STGGACAGCTCCT-
GTATTGACAGGTNNTT
 A C G T A C G T A T C G C G A T A C T G C T A G C G T A T A G C C G T A A C T G A G T C C G A T T A G C A G T C G A C T A C G T
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T