Information for 9-TGCACTTGGCAAAGAT (Motif 10)

A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A C G T A A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C T G A G T C C G T A
p-value:1e-7
log p-value:-1.667e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.5 +/- 19.6bp
Average Position of motif in Background60.3 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGCACTTGGCAAAGAT
---NNTTGGCANN---
 A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A C G T A A C T G C G T A A C G T
A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TGCACTTGGCAAAGAT
----CTTGGCAA----
 A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TGCACTTGGCAAAGAT
----NTTGGCANN---
 A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.58
Offset:5
Orientation:forward strand
Alignment:TGCACTTGGCAAAGAT
-----TTGGCA-----
 A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGCACTTGGCAAAGAT
AAGCACATGG-------
 A C G T A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A C G T A A C T G C G T A A C G T
T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mycn/MA0104.3/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGCACTTGGCAAAGAT
--CACGTGGC------
 A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A C G T A A C T G C G T A A C G T
A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TGCACTTGGCAAAGAT
ACCACTTGAA------
 A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A C G T A A C T G C G T A A C G T
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----TGCACTTGGCAAAGAT
NNTNCGCACCTGTNGAN---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A C G T A A C T G C G T A A C G T
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T A C G T A C G T A C G T

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGCACTTGGCAAAGAT
GTCACGTGGM------
 A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A C G T A A C T G C G T A A C G T
T C A G C A G T A G T C C G T A A T G C T C A G G C A T A C T G A C T G T G A C A C G T A C G T A C G T A C G T A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TGCACTTGGCAAAGAT
TTTGCACACGGCAC----
 A C G T A C G T A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A C G T A C G T A A C T G C G T A A C G T
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C A C G T A C G T A C G T A C G T