Information for 7-HCTCTGTCCAGCACAA (Motif 9)

G C A T A T G C A C G T A T G C A C G T A C T G A C G T A T G C A G T C C T G A C T A G A G T C C G T A A T G C G T C A C G T A
Reverse Opposite:
C G A T C A G T A T C G A C G T A C T G A G T C A G C T C T A G A T C G C G T A A G T C C G T A A T C G C G T A A T C G C G T A
p-value:1e-10
log p-value:-2.343e+01
Information Content per bp:1.813
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets38.3 +/- 21.6bp
Average Position of motif in Background21.0 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:HCTCTGTCCAGCACAA
---CTGTCTGTCACCT
 G C A T A T G C A C G T A T G C A C G T A C T G A C G T A T G C A G T C C T G A C T A G A G T C C G T A A T G C G T C A C G T A
A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:HCTCTGTCCAGCACAA
----TGTCTGDCACCT
 G C A T A T G C A C G T A T G C A C G T A C T G A C G T A T G C A G T C C T G A C T A G A G T C C G T A A T G C G T C A C G T A
A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:HCTCTGTCCAGCACAA
--NCTGTCAATCAN--
 G C A T A T G C A C G T A T G C A C G T A C T G A C G T A T G C A G T C C T G A C T A G A G T C C G T A A T G C G T C A C G T A
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.52
Offset:6
Orientation:forward strand
Alignment:HCTCTGTCCAGCACAA------
------CGAAGCACACAAAATA
 G C A T A T G C A C G T A T G C A C G T A C T G A C G T A T G C A G T C C T G A C T A G A G T C C G T A A T G C G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---HCTCTGTCCAGCACAA
NNGCGTGTGTGCNGCN---
 A C G T A C G T A C G T G C A T A T G C A C G T A T G C A C G T A C T G A C G T A T G C A G T C C T G A C T A G A G T C C G T A A T G C G T C A C G T A
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.51
Offset:2
Orientation:forward strand
Alignment:HCTCTGTCCAGCACAA
--SCTGTCAVTCAV--
 G C A T A T G C A C G T A T G C A C G T A C T G A C G T A T G C A G T C C T G A C T A G A G T C C G T A A T G C G T C A C G T A
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:HCTCTGTCCAGCACAA
---CTGTCTGG-----
 G C A T A T G C A C G T A T G C A C G T A C T G A C G T A T G C A G T C C T G A C T A G A G T C C G T A A T G C G T C A C G T A
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:HCTCTGTCCAGCACAA
-CTTTGT---------
 G C A T A T G C A C G T A T G C A C G T A C T G A C G T A T G C A G T C C T G A C T A G A G T C C G T A A T G C G T C A C G T A
A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:HCTCTGTCCAGCACAA
-GSCTGTCACTCA---
 G C A T A T G C A C G T A T G C A C G T A C T G A C G T A T G C A G T C C T G A C T A G A G T C C G T A A T G C G T C A C G T A
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:HCTCTGTCCAGCACAA
YCTTTGTTCC------
 G C A T A T G C A C G T A T G C A C G T A C T G A C G T A T G C A G T C C T G A C T A G A G T C C G T A A T G C G T C A C G T A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T