Information for 11-CAATAAACGG (Motif 12)

A T G C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C A C T G A C G T A C G T A C G T G T C A A C G T A C G T A T C G
p-value:1e-6
log p-value:-1.607e+01
Information Content per bp:1.939
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif12.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets63.0 +/- 13.8bp
Average Position of motif in Background51.2 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL2/MA0635.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CAATAAACGG-
-GCTAAACGGT
 A T G C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C T G A C G T
A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CAATAAACGG
GCAATAAAA--
 A C G T A T G C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C T G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAATAAACGG
CCAATAAAAA-
 A C G T A T G C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C T G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAATAAACGG
CCAATAAAAC-
 A C G T A T G C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C T G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CAATAAACGG
AAGCCATAAAA--
 A C G T A C G T A C G T A T G C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C T G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CAATAAACGG---
---NHAACBGYYV
 A T G C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAATAAACGG
NCYAATAAAA--
 A C G T A C G T A T G C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C T G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAATAAACGG
CCAATAAAAA-
 A C G T A T G C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C T G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAATAAACGG--
-AATAAACAATN
 A T G C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C T G A C G T A C G T
A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAATAAACGG
GGTAATAAAAA-
 A C G T A C G T A T G C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C T G A C T G
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T