Information for 1-TCAGSACCATGGACAG (Motif 1)

A C G T A G T C C G T A C A T G A T G C C G T A A G T C G A T C G C T A G C A T C T A G A C T G G C T A A T G C G T C A C T A G
Reverse Opposite:
G A T C A C G T T A C G C G A T A G T C A G T C C G T A C G A T C A T G A C T G A C G T T A C G G A T C C G A T T C A G T G C A
p-value:1e-234
log p-value:-5.409e+02
Information Content per bp:1.732
Number of Target Sequences with motif123.0
Percentage of Target Sequences with motif14.39%
Number of Background Sequences with motif35.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets52.6 +/- 14.6bp
Average Position of motif in Background51.3 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-TCAGSACCATGGACAG----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A G T C C G T A C A T G A T G C C G T A A G T C G A T C G C T A G C A T C T A G A C T G G C T A A T G C G T C A C T A G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:TCAGSACCATGGACAG----
TCAGCACCATGGACAGCTCC
 A C G T A G T C C G T A C A T G A T G C C G T A A G T C G A T C G C T A G C A T C T A G A C T G G C T A A T G C G T C A C T A G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:TCAGSACCATGGACAG
------CCAGGAACAG
 A C G T A G T C C G T A C A T G A T G C C G T A A G T C G A T C G C T A G C A T C T A G A C T G G C T A A T G C G T C A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TCAGSACCATGGACAG
------CAAAGGTCAG
 A C G T A G T C C G T A C A T G A T G C C G T A A G T C G A T C G C T A G C A T C T A G A C T G G C T A A T G C G T C A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.53
Offset:7
Orientation:forward strand
Alignment:TCAGSACCATGGACAG-
-------CAAGGHCANV
 A C G T A G T C C G T A C A T G A T G C C G T A A G T C G A T C G C T A G C A T C T A G A C T G G C T A A T G C G T C A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TCAGSACCATGGACAG
--AAAACAATGG----
 A C G T A G T C C G T A C A T G A T G C C G T A A G T C G A T C G C T A G C A T C T A G A C T G G C T A A T G C G T C A C T A G
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TCAGSACCATGGACAG
---GAACAATGGN---
 A C G T A G T C C G T A C A T G A T G C C G T A A G T C G A T C G C T A G C A T C T A G A C T G G C T A A T G C G T C A C T A G
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TCAGSACCATGGACAG
----AACAAAGG----
 A C G T A G T C C G T A C A T G A T G C C G T A A G T C G A T C G C T A G C A T C T A G A C T G G C T A A T G C G T C A C T A G
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TCAGSACCATGGACAG
-----BTCAAGGTCA-
 A C G T A G T C C G T A C A T G A T G C C G T A A G T C G A T C G C T A G C A T C T A G A C T G G C T A A T G C G T C A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.50
Offset:5
Orientation:forward strand
Alignment:TCAGSACCATGGACAG
-----NTCAAGGTCA-
 A C G T A G T C C G T A C A T G A T G C C G T A A G T C G A T C G C T A G C A T C T A G A C T G G C T A A T G C G T C A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T