Information for 10-TTGTCTTTCAGAT (Motif 8)

A C G T C G A T A C T G C G A T A T G C A G C T A G C T A C G T G T A C C G T A C T A G C G T A A C G T
Reverse Opposite:
C G T A C G A T A G T C A C G T A C T G C G T A C T G A C T G A A T C G C G T A A G T C C G T A C G T A
p-value:1e-11
log p-value:-2.750e+01
Information Content per bp:1.860
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 28.7bp
Average Position of motif in Background38.7 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTGTCTTTCAGAT
-TGTCTGDCACCT
 A C G T C G A T A C T G C G A T A T G C A G C T A G C T A C G T G T A C C G T A C T A G C G T A A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTGTCTTTCAGAT
CTTTGTTATGCAAAT
 A C G T A C G T A C G T C G A T A C T G C G A T A T G C A G C T A G C T A C G T G T A C C G T A C T A G C G T A A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTGTCTTTCAGAT
CTGTCTGTCACCT
 A C G T C G A T A C T G C G A T A T G C A G C T A G C T A C G T G T A C C G T A C T A G C G T A A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TTGTCTTTCAGAT
SCTGTCAVTCAV--
 A C G T A C G T C G A T A C T G C G A T A T G C A G C T A G C T A C G T G T A C C G T A C T A G C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTGTCTTTCAGAT
CATTGTTATGCAAAT
 A C G T A C G T A C G T C G A T A C T G C G A T A T G C A G C T A G C T A C G T G T A C C G T A C T A G C G T A A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTGTCTTTCAGAT
NCTGTCAATCAN--
 A C G T A C G T C G A T A C T G C G A T A T G C A G C T A G C T A C G T G T A C C G T A C T A G C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TTGTCTTTCAGAT
CCATTGTTTT------
 A C G T A C G T A C G T A C G T C G A T A C T G C G A T A T G C A G C T A G C T A C G T G T A C C G T A C T A G C G T A A C G T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TTGTCTTTCAGAT
CCATTGTTNY------
 A C G T A C G T A C G T A C G T C G A T A C T G C G A T A T G C A G C T A G C T A C G T G T A C C G T A C T A G C G T A A C G T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TTGTCTTTCAGAT
GSCTGTCACTCA---
 A C G T A C G T A C G T C G A T A C T G C G A T A T G C A G C T A G C T A C G T G T A C C G T A C T A G C G T A A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TTGTCTTTCAGAT
CCTTTGTTTT------
 A C G T A C G T A C G T A C G T C G A T A C T G C G A T A T G C A G C T A G C T A C G T G T A C C G T A C T A G C G T A A C G T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T