Information for 7-SCTGCTGGACRGAGRR (Motif 6)

A T C G A G T C A C G T A C T G G T A C A C G T A C T G A C T G C G T A A G T C C T G A A C T G G T C A C A T G C T A G T C G A
Reverse Opposite:
A G C T A G T C G A T C A C G T A G T C A G C T A C T G A C G T A G T C G T A C C G T A A C T G A G T C C G T A A C T G A T G C
p-value:1e-12
log p-value:-2.950e+01
Information Content per bp:1.880
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.5 +/- 19.1bp
Average Position of motif in Background29.8 +/- 10.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---SCTGCTGGACRGAGRR
TNTCCTGCTGTGNNG----
 A C G T A C G T A C G T A T C G A G T C A C G T A C T G G T A C A C G T A C T G A C T G C G T A A G T C C T G A A C T G G T C A C A T G C T A G T C G A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-SCTGCTGGACRGAGRR
ANCAGCTG---------
 A C G T A T C G A G T C A C G T A C T G G T A C A C G T A C T G A C T G C G T A A G T C C T G A A C T G G T C A C A T G C T A G T C G A
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---SCTGCTGGACRGAGRR
CCCCCTGCTGTG-------
 A C G T A C G T A C G T A T C G A G T C A C G T A C T G G T A C A C G T A C T G A C T G C G T A A G T C C T G A A C T G G T C A C A T G C T A G T C G A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---SCTGCTGGACRGAGRR
TCNCCTGCTGNGNNN----
 A C G T A C G T A C G T A T C G A G T C A C G T A C T G G T A C A C G T A C T G A C T G C G T A A G T C C T G A A C T G G T C A C A T G C T A G T C G A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----SCTGCTGGACRGAGRR
GGCCYCCTGCTGDGH------
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A C G T A C T G G T A C A C G T A C T G A C T G C G T A A G T C C T G A A C T G G T C A C A T G C T A G T C G A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--SCTGCTGGACRGAGRR
CAGCAGCTGN--------
 A C G T A C G T A T C G A G T C A C G T A C T G G T A C A C G T A C T G A C T G C G T A A G T C C T G A A C T G G T C A C A T G C T A G T C G A
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--SCTGCTGGACRGAGRR
NAACAGCTGG--------
 A C G T A C G T A T C G A G T C A C G T A C T G G T A C A C G T A C T G A C T G C G T A A G T C C T G A A C T G G T C A C A T G C T A G T C G A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:SCTGCTGGACRGAGRR
CCTGCTGAGH------
 A T C G A G T C A C G T A C T G G T A C A C G T A C T G A C T G C G T A A G T C C T G A A C T G G T C A C A T G C T A G T C G A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:SCTGCTGGACRGAGRR
-NTGATTGACAGN---
 A T C G A G T C A C G T A C T G G T A C A C G T A C T G A C T G C G T A A G T C C T G A A C T G G T C A C A T G C T A G T C G A
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--SCTGCTGGACRGAGRR
NAHCAGCTGD--------
 A C G T A C G T A T C G A G T C A C G T A C T G G T A C A C G T A C T G A C T G C G T A A G T C C T G A A C T G G T C A C A T G C T A G T C G A
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T