Information for 1-CTGTCCATGGTGCTGA (Motif 1)

A G T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A C G T T A C G T A G C G A C T C A T G T C G A
Reverse Opposite:
A G C T G A T C C T G A A C T G A T G C G T C A A G T C G A T C G C T A G C A T C T A G C T A G G T C A A T G C C T G A T C A G
p-value:1e-685
log p-value:-1.578e+03
Information Content per bp:1.758
Number of Target Sequences with motif270.0
Percentage of Target Sequences with motif33.50%
Number of Background Sequences with motif21.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets52.1 +/- 14.6bp
Average Position of motif in Background44.8 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.95
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCCATGGTGCTGA-
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A G T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A C G T T A C G T A G C G A C T C A T G T C G A A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.94
Offset:-4
Orientation:forward strand
Alignment:----CTGTCCATGGTGCTGA
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T A G T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A C G T T A C G T A G C G A C T C A T G T C G A
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTGTCCATGGTGCTGA
CTGTTCCTGG------
 A G T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A C G T T A C G T A G C G A C T C A T G T C G A
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGTCCATGGTGCTGA
CTGACCTTTG------
 A G T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A C G T T A C G T A G C G A C T C A T G T C G A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCATGGTGCTGA
GCTGTCAA---------
 A C G T A G T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A C G T T A C G T A G C G A C T C A T G T C G A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCATGGTGCTGA
BNTGDCCTTG-------
 A C G T A G T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A C G T T A C G T A G C G A C T C A T G T C G A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.51
Offset:10
Orientation:forward strand
Alignment:CTGTCCATGGTGCTGA----
----------TGCTGACTCA
 A G T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A C G T T A C G T A G C G A C T C A T G T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

MAFK/MA0496.1/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CTGTCCATGGTGCTGA-----
------AAANTGCTGACTNAG
 A G T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A C G T T A C G T A G C G A C T C A T G T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A G C A T C G A T A T C G G T A C A C G T A C T G C T G A A T G C G C A T G A T C C G T A C A T G

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.50
Offset:6
Orientation:forward strand
Alignment:CTGTCCATGGTGCTGA-
------AATTTGCTGAC
 A G T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A C G T T A C G T A G C G A C T C A T G T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CTGTCCATGGTGCTGA
---NCCATTGTTC---
 A G T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A C G T T A C G T A G C G A C T C A T G T C G A
A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T