Information for 11-AGCCAAGAGGTTAAGG (Motif 9)

C G T A A C T G A G T C A G T C G T C A C G T A A C T G C G T A A C T G C T A G A G C T A G C T G T C A C G T A C T A G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T C T G A C T G A A G T C A G T C A C G T A G T C A C G T A C G T A C T G A C T G A G T C A C G T
p-value:1e-10
log p-value:-2.461e+01
Information Content per bp:1.899
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets75.8 +/- 24.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.57
Offset:7
Orientation:forward strand
Alignment:AGCCAAGAGGTTAAGG---
-------AGGTCAAGGTCA
 C G T A A C T G A G T C A G T C G T C A C G T A A C T G C G T A A C T G C T A G A G C T A G C T G T C A C G T A C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGCCAAGAGGTTAAGG
NTGCCCANNGGTNA---
 A C G T C G T A A C T G A G T C A G T C G T C A C G T A A C T G C G T A A C T G C T A G A G C T A G C T G T C A C G T A C T A G A C T G
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.55
Offset:7
Orientation:forward strand
Alignment:AGCCAAGAGGTTAAGG---
-------AGGTCAAGGTCA
 C G T A A C T G A G T C A G T C G T C A C G T A A C T G C G T A A C T G C T A G A G C T A G C T G T C A C G T A C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGCCAAGAGGTTAAGG
CGTGCCAAG---------
 A C G T A C G T C G T A A C T G A G T C A G T C G T C A C G T A A C T G C G T A A C T G C T A G A G C T A G C T G T C A C G T A C T A G A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGCCAAGAGGTTAAGG
TGCCAA----------
 C G T A A C T G A G T C A G T C G T C A C G T A A C T G C G T A A C T G C T A G A G C T A G C T G T C A C G T A C T A G A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGCCAAGAGGTTAAGG
GAGGTCAAAAGGTCA---
 A C G T A C G T C G T A A C T G A G T C A G T C G T C A C G T A A C T G C G T A A C T G C T A G A G C T A G C T G T C A C G T A C T A G A C T G
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T A C G T

RARA/MA0729.1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AGCCAAGAGGTTAAGG
GAGGTCAAAAGGTCAATG
 A C G T A C G T C G T A A C T G A G T C A G T C G T C A C G T A A C T G C G T A A C T G C T A G A G C T A G C T G T C A C G T A C T A G A C T G
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGCCAAGAGGTTAAGG-
-TCTCAAAGGTCACGAG
 C G T A A C T G A G T C A G T C G T C A C G T A A C T G C G T A A C T G C T A G A G C T A G C T G T C A C G T A C T A G A C T G A C G T
A C G T C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Rarg/MA0859.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGCCAAGAGGTTAAGG
AAGGTCAAAAGGTCAA--
 A C G T A C G T C G T A A C T G A G T C A G T C G T C A C G T A A C T G C G T A A C T G C T A G A G C T A G C T G T C A C G T A C T A G A C T G
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGCCAAGAGGTTAAGG
AGCCAATCGG------
 C G T A A C T G A G T C A G T C G T C A C G T A A C T G C G T A A C T G C T A G A G C T A G C T G T C A C G T A C T A G A C T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T