Information for 11-CTCAGGAGGGCCC (Motif 6)

A G T C A G C T G T A C C G T A A C T G A C T G C G T A C T A G A C T G A C T G A G T C A G T C G T A C
Reverse Opposite:
A C T G A C T G A C T G A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G C T G A A C T G
p-value:1e-11
log p-value:-2.663e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.2 +/- 14.5bp
Average Position of motif in Background76.1 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGGAGGGCCC-
DCHCAGCAGGRGGCC
 A C G T A G T C A G C T G T A C C G T A A C T G A C T G C G T A C T A G A C T G A C T G A G T C A G T C G T A C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTCAGGAGGGCCC
CACAGCAGGGGG-
 A G T C A G C T G T A C C G T A A C T G A C T G C G T A C T A G A C T G A C T G A G T C A G T C G T A C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGGAGGGCCC
DCTCAGCAGG----
 A C G T A G T C A G C T G T A C C G T A A C T G A C T G C G T A C T A G A C T G A C T G A G T C A G T C G T A C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTCAGGAGGGCCC----
-NNNGGGGCGCCCCCNN
 A G T C A G C T G T A C C G T A A C T G A C T G C G T A C T A G A C T G A C T G A G T C A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CTCAGGAGGGCCC--
-----GTGGGCCCCA
 A G T C A G C T G T A C C G T A A C T G A C T G C G T A C T A G A C T G A C T G A G T C A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G A C T A C T G A C T G C T A G A T G C A G T C A G T C A G T C C T G A

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTCAGGAGGGCCC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A G C T G T A C C G T A A C T G A C T G C G T A C T A G A C T G A C T G A G T C A G T C G T A C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTCAGGAGGGCCC
-TGGGGAAGGGCM
 A G T C A G C T G T A C C G T A A C T G A C T G C G T A C T A G A C T G A C T G A G T C A G T C G T A C
A C G T G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTCAGGAGGGCCC
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C A G C T G T A C C G T A A C T G A C T G C G T A C T A G A C T G A C T G A G T C A G T C G T A C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTCAGGAGGGCCC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A G C T G T A C C G T A A C T G A C T G C G T A C T A G A C T G A C T G A G T C A G T C G T A C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

REL/MA0101.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CTCAGGAGGGCCC-
----GGAAANCCCC
 A G T C A G C T G T A C C G T A A C T G A C T G C G T A C T A G A C T G A C T G A G T C A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C